miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 5' -64.3 NC_001798.1 + 29914 0.68 0.459399
Target:  5'- -gGUCgCGGGCggUgGGCUCgGGGGCGGg- -3'
miRNA:   3'- ggUAG-GCCCG--GgUCGAG-CCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 32002 0.67 0.476094
Target:  5'- gCCGcgCCGGGCCCcggacucGGaCUCGGGcgaccGCGGcCa -3'
miRNA:   3'- -GGUa-GGCCCGGG-------UC-GAGCCC-----CGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 34739 0.72 0.255847
Target:  5'- ---gUCGGGCCCGGgagCGGGGCGGcCc -3'
miRNA:   3'- gguaGGCCCGGGUCga-GCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 36139 0.66 0.569197
Target:  5'- uCCcgCCggugGGGCgCGGCggcggUCGGGGUGGg- -3'
miRNA:   3'- -GGuaGG----CCCGgGUCG-----AGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 36398 0.7 0.354443
Target:  5'- gCGgcgCCgGGGCCCcccuGCcgggCGGGGCGGUg -3'
miRNA:   3'- gGUa--GG-CCCGGGu---CGa---GCCCCGCCAg -5'
5450 5' -64.3 NC_001798.1 + 39413 0.67 0.522305
Target:  5'- uCCGggaCCGGGgCgCGGCcguccgcgugCGGGGgGGUCa -3'
miRNA:   3'- -GGUa--GGCCCgG-GUCGa---------GCCCCgCCAG- -5'
5450 5' -64.3 NC_001798.1 + 43670 0.7 0.339868
Target:  5'- gCCG-CgGGGCUgGGgUCGuGGGUGGUCa -3'
miRNA:   3'- -GGUaGgCCCGGgUCgAGC-CCCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 44889 0.67 0.476094
Target:  5'- --uUCCGGGauggcguCCCuGCUCGGGugcuguGCGGUUg -3'
miRNA:   3'- gguAGGCCC-------GGGuCGAGCCC------CGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 44960 0.68 0.432847
Target:  5'- -gAUUCGGGCCgCGGCuccgcccUCGGaGGCGGa- -3'
miRNA:   3'- ggUAGGCCCGG-GUCG-------AGCC-CCGCCag -5'
5450 5' -64.3 NC_001798.1 + 47273 0.72 0.244544
Target:  5'- gCGgaagUCGGGCCU-GUUCGGGGCGuGUCu -3'
miRNA:   3'- gGUa---GGCCCGGGuCGAGCCCCGC-CAG- -5'
5450 5' -64.3 NC_001798.1 + 51173 0.66 0.540904
Target:  5'- gCGUCCGaGGCCCGGg-CGGcGGCGc-- -3'
miRNA:   3'- gGUAGGC-CCGGGUCgaGCC-CCGCcag -5'
5450 5' -64.3 NC_001798.1 + 54371 0.66 0.539968
Target:  5'- gCGUCC-GGCCCaccggggGGCcgCGGcGCGGUCg -3'
miRNA:   3'- gGUAGGcCCGGG-------UCGa-GCCcCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 57197 0.67 0.468147
Target:  5'- aCGUgCGGGUCCguucGGUUgGGGGCGcuGUCa -3'
miRNA:   3'- gGUAgGCCCGGG----UCGAgCCCCGC--CAG- -5'
5450 5' -64.3 NC_001798.1 + 57394 0.72 0.255847
Target:  5'- gCCGUaCCGGGCCagCGGgUCGuGGCGGUUg -3'
miRNA:   3'- -GGUA-GGCCCGG--GUCgAGCcCCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 57445 0.68 0.417023
Target:  5'- -uGUCUucggGGGCCCGGuCUUggGGGGCGGg- -3'
miRNA:   3'- ggUAGG----CCCGGGUC-GAG--CCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 58691 0.7 0.347101
Target:  5'- gCCGUCaGGGCCgCGGCggCGcGGG-GGUCg -3'
miRNA:   3'- -GGUAGgCCCGG-GUCGa-GC-CCCgCCAG- -5'
5450 5' -64.3 NC_001798.1 + 58979 0.66 0.540904
Target:  5'- gCGUCgGcGGCCgGGCgaacgCGGGGgGGg- -3'
miRNA:   3'- gGUAGgC-CCGGgUCGa----GCCCCgCCag -5'
5450 5' -64.3 NC_001798.1 + 60295 0.74 0.205336
Target:  5'- gCCGUUgGGGCCgAGCUCGaacgugguggguuuGGCGGUCu -3'
miRNA:   3'- -GGUAGgCCCGGgUCGAGCc-------------CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 69562 0.67 0.513098
Target:  5'- uCCAcggcacUCUcGGCCCAcGCcaUCGGGGCuGUCg -3'
miRNA:   3'- -GGU------AGGcCCGGGU-CG--AGCCCCGcCAG- -5'
5450 5' -64.3 NC_001798.1 + 71555 0.66 0.551228
Target:  5'- -gAUCCaGGGCgCCAGCgagcacacgcacgggCGGcucugugaGGCGGUCg -3'
miRNA:   3'- ggUAGG-CCCG-GGUCGa--------------GCC--------CCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.