miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 5' -64.3 NC_001798.1 + 2621 0.69 0.361894
Target:  5'- gCCGcCCGGcggcGCCCuGGC-CGGGGCGGg- -3'
miRNA:   3'- -GGUaGGCC----CGGG-UCGaGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 4045 0.68 0.417023
Target:  5'- gCCG-CgCGGGCCCGGCggcgcuccaggCGGcccGCGGUCg -3'
miRNA:   3'- -GGUaG-GCCCGGGUCGa----------GCCc--CGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 4092 0.7 0.332745
Target:  5'- -gGUCCGGGCCggggcgGGCUCGgcccuGGGCGGg- -3'
miRNA:   3'- ggUAGGCCCGGg-----UCGAGC-----CCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 4484 0.67 0.468147
Target:  5'- cCgGUCCGcGGaCCCAGCggcccgCGucGCGGUCg -3'
miRNA:   3'- -GgUAGGC-CC-GGGUCGa-----GCccCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 4857 0.71 0.305358
Target:  5'- aCgGUCCGGGUUCGGggUGGgcGGCGGUCc -3'
miRNA:   3'- -GgUAGGCCCGGGUCgaGCC--CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 5037 0.66 0.55972
Target:  5'- uCCGaCCGGGgUguGCgggGGGGgGGUCu -3'
miRNA:   3'- -GGUaGGCCCgGguCGag-CCCCgCCAG- -5'
5450 5' -64.3 NC_001798.1 + 5908 0.7 0.339868
Target:  5'- cCCGaggCGGGCCCGGaCggGGGGCGGg- -3'
miRNA:   3'- -GGUag-GCCCGGGUC-GagCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 7044 0.66 0.55972
Target:  5'- gCAUCCGGgguuuccccgGCCCAcccccaaaccccGgUUGGGGCGGg- -3'
miRNA:   3'- gGUAGGCC----------CGGGU------------CgAGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 7176 0.67 0.476981
Target:  5'- aCCga-CGGGCCCccGCacCGGGGCGG-Cg -3'
miRNA:   3'- -GGuagGCCCGGGu-CGa-GCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 12497 0.67 0.485896
Target:  5'- cCCAcaCGGGCCCAGagguacaCGGGaGCGGg- -3'
miRNA:   3'- -GGUagGCCCGGGUCga-----GCCC-CGCCag -5'
5450 5' -64.3 NC_001798.1 + 12680 0.66 0.539968
Target:  5'- gCCAgcgcgCCGaugaucaGGCCCGgguuGCUgGGGGCGG-Cg -3'
miRNA:   3'- -GGUa----GGC-------CCGGGU----CGAgCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 15931 0.69 0.377119
Target:  5'- aCCGUCaucuaGGGCCCcgggGGCccaaUGGGGCGG-Ca -3'
miRNA:   3'- -GGUAGg----CCCGGG----UCGa---GCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 17960 0.66 0.540904
Target:  5'- cCCGUUCGcaGGUCCGGacgUCGGGGgGGg- -3'
miRNA:   3'- -GGUAGGC--CCGGGUCg--AGCCCCgCCag -5'
5450 5' -64.3 NC_001798.1 + 20362 0.69 0.400752
Target:  5'- ---gCCGGG-CgGGUUCGGGGCGG-Ca -3'
miRNA:   3'- gguaGGCCCgGgUCGAGCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 21798 0.91 0.011736
Target:  5'- cCCGUCCGGGCCCGcCUCGGGGCGGa- -3'
miRNA:   3'- -GGUAGGCCCGGGUcGAGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 23662 0.7 0.339868
Target:  5'- gCCG-CCGGGCCC-GCgCGGcGGUGGcCg -3'
miRNA:   3'- -GGUaGGCCCGGGuCGaGCC-CCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 23804 0.66 0.540904
Target:  5'- gCCGUggcCCGGGgCCGGCcccccgccccCGGGGCGcGUg -3'
miRNA:   3'- -GGUA---GGCCCgGGUCGa---------GCCCCGC-CAg -5'
5450 5' -64.3 NC_001798.1 + 26197 0.68 0.450738
Target:  5'- aCggCCGGGCCgCcGcCUCGGGcGCGGg- -3'
miRNA:   3'- gGuaGGCCCGG-GuC-GAGCCC-CGCCag -5'
5450 5' -64.3 NC_001798.1 + 28661 0.66 0.569197
Target:  5'- aCCGguUCCGGcGCCgCguGGCggCGGccgaGGCGGUCa -3'
miRNA:   3'- -GGU--AGGCC-CGG-G--UCGa-GCC----CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 28816 0.71 0.292326
Target:  5'- gCCGcCgCGGGCCCgGGC-CGucGGGCGGUCu -3'
miRNA:   3'- -GGUaG-GCCCGGG-UCGaGC--CCCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.