miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 5' -64.3 NC_001798.1 + 21798 0.91 0.011736
Target:  5'- cCCGUCCGGGCCCGcCUCGGGGCGGa- -3'
miRNA:   3'- -GGUAGGCCCGGGUcGAGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 152987 0.84 0.039602
Target:  5'- aCCAUaCCGGGaagCCGGCgCGGGGCGGUCg -3'
miRNA:   3'- -GGUA-GGCCCg--GGUCGaGCCCCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 102222 0.83 0.045014
Target:  5'- gUCGaCCGGGCgCGGCUCGGGGCGGg- -3'
miRNA:   3'- -GGUaGGCCCGgGUCGAGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 86842 0.77 0.116536
Target:  5'- cCCGgcCCGGGCCCGGCcgcgacaagaccCGGcGGCGGUCg -3'
miRNA:   3'- -GGUa-GGCCCGGGUCGa-----------GCC-CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 153027 0.74 0.194135
Target:  5'- -aGUCCGGGCCCGcGCggCGGcGcGCGGUUg -3'
miRNA:   3'- ggUAGGCCCGGGU-CGa-GCC-C-CGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 60295 0.74 0.205336
Target:  5'- gCCGUUgGGGCCgAGCUCGaacgugguggguuuGGCGGUCu -3'
miRNA:   3'- -GGUAGgCCCGGgUCGAGCc-------------CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 149670 0.73 0.213111
Target:  5'- -gGUCgCGGGCCCcgGGCUCGGGGCc--- -3'
miRNA:   3'- ggUAG-GCCCGGG--UCGAGCCCCGccag -5'
5450 5' -64.3 NC_001798.1 + 126592 0.73 0.218098
Target:  5'- -gAUCCccgGGGCCCgcagcuucgggGGCUCGGGGgGGUa -3'
miRNA:   3'- ggUAGG---CCCGGG-----------UCGAGCCCCgCCAg -5'
5450 5' -64.3 NC_001798.1 + 139818 0.73 0.218098
Target:  5'- aCGUCCaGGCCCAGCU-GGGGCa--- -3'
miRNA:   3'- gGUAGGcCCGGGUCGAgCCCCGccag -5'
5450 5' -64.3 NC_001798.1 + 78238 0.73 0.228371
Target:  5'- gCCAUCCGGGCCgAcgugcaccgggcGCUCGGcGGCGu-- -3'
miRNA:   3'- -GGUAGGCCCGGgU------------CGAGCC-CCGCcag -5'
5450 5' -64.3 NC_001798.1 + 111824 0.73 0.233659
Target:  5'- gCGUCCaGGGgCUGGCgCGGGGCGGg- -3'
miRNA:   3'- gGUAGG-CCCgGGUCGaGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 47273 0.72 0.244544
Target:  5'- gCGgaagUCGGGCCU-GUUCGGGGCGuGUCu -3'
miRNA:   3'- gGUa---GGCCCGGGuCGAGCCCCGC-CAG- -5'
5450 5' -64.3 NC_001798.1 + 57394 0.72 0.255847
Target:  5'- gCCGUaCCGGGCCagCGGgUCGuGGCGGUUg -3'
miRNA:   3'- -GGUA-GGCCCGG--GUCgAGCcCCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 34739 0.72 0.255847
Target:  5'- ---gUCGGGCCCGGgagCGGGGCGGcCc -3'
miRNA:   3'- gguaGGCCCGGGUCga-GCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 28816 0.71 0.292326
Target:  5'- gCCGcCgCGGGCCCgGGC-CGucGGGCGGUCu -3'
miRNA:   3'- -GGUaG-GCCCGGG-UCGaGC--CCCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 153296 0.71 0.292326
Target:  5'- gCCGUCUucguGGGCCCgGGCUCGGGcuCGGg- -3'
miRNA:   3'- -GGUAGG----CCCGGG-UCGAGCCCc-GCCag -5'
5450 5' -64.3 NC_001798.1 + 4857 0.71 0.305358
Target:  5'- aCgGUCCGGGUUCGGggUGGgcGGCGGUCc -3'
miRNA:   3'- -GgUAGGCCCGGGUCgaGCC--CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 103739 0.7 0.316782
Target:  5'- aCGUCCGGGCCgGGacuaaagcccgcguUUCGGGGCGc-- -3'
miRNA:   3'- gGUAGGCCCGGgUC--------------GAGCCCCGCcag -5'
5450 5' -64.3 NC_001798.1 + 4092 0.7 0.332745
Target:  5'- -gGUCCGGGCCggggcgGGCUCGgcccuGGGCGGg- -3'
miRNA:   3'- ggUAGGCCCGGg-----UCGAGC-----CCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 5908 0.7 0.339868
Target:  5'- cCCGaggCGGGCCCGGaCggGGGGCGGg- -3'
miRNA:   3'- -GGUag-GCCCGGGUC-GagCCCCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.