miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5452 3' -62.5 NC_001798.1 + 96975 0.84 0.054951
Target:  5'- gCGCGGACCgcGGCGggCGGCGGGGCCa- -3'
miRNA:   3'- -GUGCUUGG--CCGCuaGCCGCCCCGGgu -5'
5452 3' -62.5 NC_001798.1 + 150365 0.78 0.1363
Target:  5'- cCACcGGCaCGGCGggCGGCGcGGGCCCGg -3'
miRNA:   3'- -GUGcUUG-GCCGCuaGCCGC-CCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 153079 0.76 0.165631
Target:  5'- gGCGGAgCGGCGGggCGGCGccGGGCCCu -3'
miRNA:   3'- gUGCUUgGCCGCUa-GCCGC--CCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 2483 0.75 0.195819
Target:  5'- gGCGGGCCGGCGGgucagCGccGCGGGGCgCGg -3'
miRNA:   3'- gUGCUUGGCCGCUa----GC--CGCCCCGgGU- -5'
5452 3' -62.5 NC_001798.1 + 54978 0.75 0.199089
Target:  5'- aUACGAaaacaucugcccucGCCGGCGucuugcCGGCGGGGCCg- -3'
miRNA:   3'- -GUGCU--------------UGGCCGCua----GCCGCCCCGGgu -5'
5452 3' -62.5 NC_001798.1 + 6046 0.75 0.215151
Target:  5'- aGCGAgacagagacGCCGGCGG-CGaGCGGGGCaCCGa -3'
miRNA:   3'- gUGCU---------UGGCCGCUaGC-CGCCCCG-GGU- -5'
5452 3' -62.5 NC_001798.1 + 108465 0.75 0.215151
Target:  5'- aCGCGAGCCuGCccGAgcuccccgaGGCGGGGCCCAc -3'
miRNA:   3'- -GUGCUUGGcCG--CUag-------CCGCCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 24545 0.75 0.220234
Target:  5'- gACGAcggcGCCGGCGGUggUGGCGGcGGCCg- -3'
miRNA:   3'- gUGCU----UGGCCGCUA--GCCGCC-CCGGgu -5'
5452 3' -62.5 NC_001798.1 + 102379 0.75 0.220234
Target:  5'- cCACccGCCuGGCGGUCGGCGGcgauGGCCCc -3'
miRNA:   3'- -GUGcuUGG-CCGCUAGCCGCC----CCGGGu -5'
5452 3' -62.5 NC_001798.1 + 130521 0.74 0.22752
Target:  5'- gACGAuGCCGGUGG-CGGCgauggccccgaggugGGGGCCCAc -3'
miRNA:   3'- gUGCU-UGGCCGCUaGCCG---------------CCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 102557 0.74 0.252908
Target:  5'- aCGCGGucAgCGGCGggUGGCGGGGCgCGg -3'
miRNA:   3'- -GUGCU--UgGCCGCuaGCCGCCCCGgGU- -5'
5452 3' -62.5 NC_001798.1 + 121242 0.74 0.252908
Target:  5'- aGCGAguGCCuGGCGG-CGGCGGGGguCCCGc -3'
miRNA:   3'- gUGCU--UGG-CCGCUaGCCGCCCC--GGGU- -5'
5452 3' -62.5 NC_001798.1 + 41438 0.72 0.311963
Target:  5'- aCGCGGgcgugggggguccauGCCccgccggggggGGCGGUCGGCGGG-CCCAg -3'
miRNA:   3'- -GUGCU---------------UGG-----------CCGCUAGCCGCCCcGGGU- -5'
5452 3' -62.5 NC_001798.1 + 105174 0.72 0.316068
Target:  5'- -cUGAACCuccaucuccGCGG-CGGCGGGGCCCGc -3'
miRNA:   3'- guGCUUGGc--------CGCUaGCCGCCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 34783 0.72 0.322302
Target:  5'- aCGCGGaaacgccGCCGGCG--CGGCccGGGGCCCc -3'
miRNA:   3'- -GUGCU-------UGGCCGCuaGCCG--CCCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 154103 0.72 0.330045
Target:  5'- gCGCGGccggcGCCGGgGAccccggCGGCGGGGaCCCc -3'
miRNA:   3'- -GUGCU-----UGGCCgCUa-----GCCGCCCC-GGGu -5'
5452 3' -62.5 NC_001798.1 + 64496 0.72 0.330045
Target:  5'- -uUGAACCgccggaGGgGGUgGGCGGGGUCCAg -3'
miRNA:   3'- guGCUUGG------CCgCUAgCCGCCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 2943 0.72 0.330045
Target:  5'- uCGCGcAGCCaGGCGcgCaGGCGGGGCgCGu -3'
miRNA:   3'- -GUGC-UUGG-CCGCuaG-CCGCCCCGgGU- -5'
5452 3' -62.5 NC_001798.1 + 53048 0.72 0.337203
Target:  5'- aCGCGGcauACCucCGAcCGGCGGGGCCCc -3'
miRNA:   3'- -GUGCU---UGGccGCUaGCCGCCCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 83836 0.71 0.344473
Target:  5'- gACGGGCCGGUccccguccGggCGGCGcuggcGGGCCCGa -3'
miRNA:   3'- gUGCUUGGCCG--------CuaGCCGC-----CCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.