miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5452 3' -62.5 NC_001798.1 + 62 0.68 0.537012
Target:  5'- gCGCGAagGCgGGCGGcggCGGCGGGcgggcggcagggcaGCCCc -3'
miRNA:   3'- -GUGCU--UGgCCGCUa--GCCGCCC--------------CGGGu -5'
5452 3' -62.5 NC_001798.1 + 2238 0.67 0.587698
Target:  5'- aGCGGGCCGaaGG-CGGCGGGcGCgCCGc -3'
miRNA:   3'- gUGCUUGGCcgCUaGCCGCCC-CG-GGU- -5'
5452 3' -62.5 NC_001798.1 + 2408 0.69 0.448834
Target:  5'- gGCGGccgagggcGCCGGCGugUGGCuGGGCCCc -3'
miRNA:   3'- gUGCU--------UGGCCGCuaGCCGcCCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 2483 0.75 0.195819
Target:  5'- gGCGGGCCGGCGGgucagCGccGCGGGGCgCGg -3'
miRNA:   3'- gUGCUUGGCCGCUa----GC--CGCCCCGgGU- -5'
5452 3' -62.5 NC_001798.1 + 2519 0.71 0.366952
Target:  5'- cCGCGGcGgCGGCG-UCGGCGGGGCg-- -3'
miRNA:   3'- -GUGCU-UgGCCGCuAGCCGCCCCGggu -5'
5452 3' -62.5 NC_001798.1 + 2764 0.66 0.616803
Target:  5'- cCGCGGcGgCGGCGG-CGGCGGaGCUCAg -3'
miRNA:   3'- -GUGCU-UgGCCGCUaGCCGCCcCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 2943 0.72 0.330045
Target:  5'- uCGCGcAGCCaGGCGcgCaGGCGGGGCgCGu -3'
miRNA:   3'- -GUGC-UUGG-CCGCuaG-CCGCCCCGgGU- -5'
5452 3' -62.5 NC_001798.1 + 3317 0.7 0.414848
Target:  5'- aACGGGgCGGCGGcggCGGCGGGcuuCCCGc -3'
miRNA:   3'- gUGCUUgGCCGCUa--GCCGCCCc--GGGU- -5'
5452 3' -62.5 NC_001798.1 + 4048 0.67 0.575158
Target:  5'- gCGCGGGcCCGGCGGcgcuccaggCGGCccgcggucgccgcgGGGGUCCGg -3'
miRNA:   3'- -GUGCUU-GGCCGCUa--------GCCG--------------CCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 4104 0.7 0.431646
Target:  5'- gGCGGGCUcggcccugGGCGGgcUCGGcCGGGGCgCCGc -3'
miRNA:   3'- gUGCUUGG--------CCGCU--AGCC-GCCCCG-GGU- -5'
5452 3' -62.5 NC_001798.1 + 4371 0.71 0.385649
Target:  5'- gGCGcGCCGGCGgcggugguGgugguggugguggugUCGGCGGGGCgCCGg -3'
miRNA:   3'- gUGCuUGGCCGC--------U---------------AGCCGCCCCG-GGU- -5'
5452 3' -62.5 NC_001798.1 + 4831 0.68 0.530422
Target:  5'- -cCGAACCcgGGcCGcgCGGCGGGGCg-- -3'
miRNA:   3'- guGCUUGG--CC-GCuaGCCGCCCCGggu -5'
5452 3' -62.5 NC_001798.1 + 5720 0.66 0.626534
Target:  5'- uGCGAgcGCUGGCGccCuGCccGGGGCCCGc -3'
miRNA:   3'- gUGCU--UGGCCGCuaGcCG--CCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 5858 0.66 0.655723
Target:  5'- uGCGAgcACUGGCGccCuGCccGGGGCCCGc -3'
miRNA:   3'- gUGCU--UGGCCGCuaGcCG--CCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 6046 0.75 0.215151
Target:  5'- aGCGAgacagagacGCCGGCGG-CGaGCGGGGCaCCGa -3'
miRNA:   3'- gUGCU---------UGGCCGCUaGC-CGCCCCG-GGU- -5'
5452 3' -62.5 NC_001798.1 + 6368 0.7 0.414848
Target:  5'- gACGGGCCGGgGGgcCGG-GGGGCCgGg -3'
miRNA:   3'- gUGCUUGGCCgCUa-GCCgCCCCGGgU- -5'
5452 3' -62.5 NC_001798.1 + 6625 0.7 0.406602
Target:  5'- gACGGGCCGGgG---GGaCGGGGCCCc -3'
miRNA:   3'- gUGCUUGGCCgCuagCC-GCCCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 8878 0.66 0.665428
Target:  5'- aCGCGGaagggcGCUGGCGGagGGCGGaGGCg-- -3'
miRNA:   3'- -GUGCU------UGGCCGCUagCCGCC-CCGggu -5'
5452 3' -62.5 NC_001798.1 + 12023 0.66 0.665428
Target:  5'- aACGccaCGGCGGggCGGCGGGGgCa- -3'
miRNA:   3'- gUGCuugGCCGCUa-GCCGCCCCgGgu -5'
5452 3' -62.5 NC_001798.1 + 15206 0.66 0.665428
Target:  5'- gGCGAGCCGGgGGgagCGucCGcGGGUCCGu -3'
miRNA:   3'- gUGCUUGGCCgCUa--GCc-GC-CCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.