miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 23521 0.67 0.700914
Target:  5'- ---cCGCGG-GCGGGACCCucgGCGCgGAc -3'
miRNA:   3'- ccauGUGUCgCGCCCUGGG---CGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 119516 0.67 0.700914
Target:  5'- cGGggGCA-GGCGUguugggaaGGGACCCGCGgaGGa -3'
miRNA:   3'- -CCa-UGUgUCGCG--------CCCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 27247 0.67 0.700914
Target:  5'- cGGgggAgGCGGcCGCGGGACCgcagccccguggCGCGCgGGg -3'
miRNA:   3'- -CCa--UgUGUC-GCGCCCUGG------------GCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 111130 0.67 0.69994
Target:  5'- --aGCGCAGCaggGCGGcgcugucGGCCCGCGCg-- -3'
miRNA:   3'- ccaUGUGUCG---CGCC-------CUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 5862 0.67 0.69994
Target:  5'- --aGCACuGGCGCccugcccGGGGCCCGCGUc-- -3'
miRNA:   3'- ccaUGUG-UCGCG-------CCCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 35278 0.68 0.691144
Target:  5'- --cACGCGG-GCGGGGCUCGgGCUc- -3'
miRNA:   3'- ccaUGUGUCgCGCCCUGGGCgCGAcu -5'
5461 5' -59.5 NC_001798.1 + 65078 0.68 0.691144
Target:  5'- gGGUGCACuggGGCGUGGGuuguagCGUGCUGu -3'
miRNA:   3'- -CCAUGUG---UCGCGCCCugg---GCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 23647 0.68 0.691144
Target:  5'- cGGgcCGCcuggAGCGCcgccGGGCCCGCGCg-- -3'
miRNA:   3'- -CCauGUG----UCGCGc---CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 146829 0.68 0.691144
Target:  5'- cGGggGCGCGGCaGCaacgaacgcaGGGGCCCGcCGCcGAu -3'
miRNA:   3'- -CCa-UGUGUCG-CG----------CCCUGGGC-GCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 62808 0.68 0.690165
Target:  5'- cGGUuucugGCGCAGCuGUGGGcccacgcgcccccGCCCGCGUUu- -3'
miRNA:   3'- -CCA-----UGUGUCG-CGCCC-------------UGGGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 131584 0.68 0.690165
Target:  5'- uGGUccGCGCgccaaugGGCuCGGGAaaaacuaCCGCGCUGAu -3'
miRNA:   3'- -CCA--UGUG-------UCGcGCCCUg------GGCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 150374 0.68 0.681328
Target:  5'- cGGcGgGCGGCGCGGG-CCCGgcCGCg-- -3'
miRNA:   3'- -CCaUgUGUCGCGCCCuGGGC--GCGacu -5'
5461 5' -59.5 NC_001798.1 + 150421 0.68 0.681328
Target:  5'- gGGgcgGCgGCGGCGCGGGGCggacuccggaCGCGCgGGg -3'
miRNA:   3'- -CCa--UG-UGUCGCGCCCUGg---------GCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 117566 0.68 0.680344
Target:  5'- aGGUGcCGCGGCGCGccggcauGGACCaCGgGCagGAu -3'
miRNA:   3'- -CCAU-GUGUCGCGC-------CCUGG-GCgCGa-CU- -5'
5461 5' -59.5 NC_001798.1 + 97542 0.68 0.671474
Target:  5'- cGGagGCGUGGCGCGGGgacGCCCGCGagcGAg -3'
miRNA:   3'- -CCa-UGUGUCGCGCCC---UGGGCGCga-CU- -5'
5461 5' -59.5 NC_001798.1 + 24903 0.68 0.671474
Target:  5'- uGGgcccgGCGCuGcCGCGGaGCCCGCGCcugcUGAg -3'
miRNA:   3'- -CCa----UGUGuC-GCGCCcUGGGCGCG----ACU- -5'
5461 5' -59.5 NC_001798.1 + 123217 0.68 0.66159
Target:  5'- cGGUucugucGCGgGGCGgcuaCGGGACCCGgccuugucCGCUGAc -3'
miRNA:   3'- -CCA------UGUgUCGC----GCCCUGGGC--------GCGACU- -5'
5461 5' -59.5 NC_001798.1 + 84448 0.68 0.66159
Target:  5'- --cGCGCAGCgugGCGGGaacaaugaGCCUgauGCGCUGAa -3'
miRNA:   3'- ccaUGUGUCG---CGCCC--------UGGG---CGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 95305 0.68 0.658619
Target:  5'- uGUGCGCGGCgucgagucucggggGCGGGGCCCacgagcauuCGCUGu -3'
miRNA:   3'- cCAUGUGUCG--------------CGCCCUGGGc--------GCGACu -5'
5461 5' -59.5 NC_001798.1 + 35811 0.68 0.641761
Target:  5'- cGGggGgGgGGCGuCGGGACUCGCGgaGGg -3'
miRNA:   3'- -CCa-UgUgUCGC-GCCCUGGGCGCgaCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.