miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 27489 0.66 0.767311
Target:  5'- cGGggGCG-GGCGCGGGAaaaaagCCGCGCgGGg -3'
miRNA:   3'- -CCa-UGUgUCGCGCCCUg-----GGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 30182 0.77 0.211058
Target:  5'- cGGgggACACGGCGCGGGGgucccgccucacgcCCCGCGCc-- -3'
miRNA:   3'- -CCa--UGUGUCGCGCCCU--------------GGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 31151 0.66 0.767311
Target:  5'- cGGggGCgGCGGUGCGGGggcgACCCGCGg--- -3'
miRNA:   3'- -CCa-UG-UGUCGCGCCC----UGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 31337 0.67 0.739366
Target:  5'- --gGC-CGGCGgGGGGCgCGCGCa-- -3'
miRNA:   3'- ccaUGuGUCGCgCCCUGgGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 31660 0.71 0.495797
Target:  5'- cGG-ACGCGGC-CGGG-CCCGCGCc-- -3'
miRNA:   3'- -CCaUGUGUCGcGCCCuGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 34799 0.67 0.700914
Target:  5'- --gGCGCGGCcCGGGGCCCcggggcccccGCGCUc- -3'
miRNA:   3'- ccaUGUGUCGcGCCCUGGG----------CGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 35278 0.68 0.691144
Target:  5'- --cACGCGG-GCGGGGCUCGgGCUc- -3'
miRNA:   3'- ccaUGUGUCgCGCCCUGGGCgCGAcu -5'
5461 5' -59.5 NC_001798.1 + 35811 0.68 0.641761
Target:  5'- cGGggGgGgGGCGuCGGGACUCGCGgaGGg -3'
miRNA:   3'- -CCa-UgUgUCGC-GCCCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 36394 0.71 0.502339
Target:  5'- -cUGCGCGGCGcCGGGGCCCcccugccgggcgggGCGgUGGg -3'
miRNA:   3'- ccAUGUGUCGC-GCCCUGGG--------------CGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 43024 0.69 0.631833
Target:  5'- cGGgg-GgAGCGCGGGGCCCcggGCGCa-- -3'
miRNA:   3'- -CCaugUgUCGCGCCCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 44194 0.72 0.424079
Target:  5'- uGGUGCacgaACAGCGUGGuGAggCCGCGCUGc -3'
miRNA:   3'- -CCAUG----UGUCGCGCC-CUg-GGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 47584 0.71 0.495797
Target:  5'- cGGgaaGCGCcGCGCGGGACCCacgaggaGCUGu -3'
miRNA:   3'- -CCa--UGUGuCGCGCCCUGGGcg-----CGACu -5'
5461 5' -59.5 NC_001798.1 + 49131 0.81 0.123636
Target:  5'- uGGgcuuCAGCGCGGGuCCCGCGCUGu -3'
miRNA:   3'- -CCauguGUCGCGCCCuGGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 51952 0.68 0.641761
Target:  5'- -cUGCuCAGCGCGGGAggggCCGCGCc-- -3'
miRNA:   3'- ccAUGuGUCGCGCCCUg---GGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 52419 0.7 0.543295
Target:  5'- cGUGCugGGCGCGGccGugUaCGCGCUGc -3'
miRNA:   3'- cCAUGugUCGCGCC--CugG-GCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 52872 0.7 0.552983
Target:  5'- cGUGCugGGgcCGCGGG-UCCGCGCgugGAc -3'
miRNA:   3'- cCAUGugUC--GCGCCCuGGGCGCGa--CU- -5'
5461 5' -59.5 NC_001798.1 + 53107 0.66 0.785388
Target:  5'- gGGcGCGCGGCGCGaGcucCCUGCgGCUGGc -3'
miRNA:   3'- -CCaUGUGUCGCGC-Ccu-GGGCG-CGACU- -5'
5461 5' -59.5 NC_001798.1 + 53869 0.66 0.802947
Target:  5'- uGGcGCuCAGCGgGagucuggaGGGCCCGCGgaGAc -3'
miRNA:   3'- -CCaUGuGUCGCgC--------CCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 58409 0.66 0.785388
Target:  5'- --cGCGCGGCGCaGGcGGCCaGCGCg-- -3'
miRNA:   3'- ccaUGUGUCGCG-CC-CUGGgCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 62808 0.68 0.690165
Target:  5'- cGGUuucugGCGCAGCuGUGGGcccacgcgcccccGCCCGCGUUu- -3'
miRNA:   3'- -CCA-----UGUGUCG-CGCCC-------------UGGGCGCGAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.