miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 1537 0.74 0.343779
Target:  5'- gGGaGCACGGCGCGGcGguACUCGCGCgggGAc -3'
miRNA:   3'- -CCaUGUGUCGCGCC-C--UGGGCGCGa--CU- -5'
5461 5' -59.5 NC_001798.1 + 1730 0.69 0.602077
Target:  5'- cGGU--GCGGCGCaGGuCCCGCGCc-- -3'
miRNA:   3'- -CCAugUGUCGCGcCCuGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 2210 0.67 0.739366
Target:  5'- --cGCGCGGCGCaGcGGGCCCgagGCGCg-- -3'
miRNA:   3'- ccaUGUGUCGCG-C-CCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 2274 0.67 0.71932
Target:  5'- gGGgcgGCGCAGCGCGcGGCCagcgaggccagcgCGCGCgGGu -3'
miRNA:   3'- -CCa--UGUGUCGCGCcCUGG-------------GCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 2569 0.67 0.739366
Target:  5'- cGGccGCGgGGCGgGGGGCguCCGCGCg-- -3'
miRNA:   3'- -CCa-UGUgUCGCgCCCUG--GGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 5446 0.66 0.773692
Target:  5'- --aGCGCccGGCGCGGGcggcuuccgcuuccGCCCGCGaugcuaaUGAg -3'
miRNA:   3'- ccaUGUG--UCGCGCCC--------------UGGGCGCg------ACU- -5'
5461 5' -59.5 NC_001798.1 + 5718 0.67 0.73842
Target:  5'- aGUGCG-AGCGCuggcgcccugcccGGGGCCCGCGUc-- -3'
miRNA:   3'- cCAUGUgUCGCG-------------CCCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 5862 0.67 0.69994
Target:  5'- --aGCACuGGCGCccugcccGGGGCCCGCGUc-- -3'
miRNA:   3'- ccaUGUG-UCGCG-------CCCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 9144 0.71 0.486518
Target:  5'- cGGcACGCgGGCGCGGcGccGCCCGCGCcGGg -3'
miRNA:   3'- -CCaUGUG-UCGCGCC-C--UGGGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 16155 0.66 0.785388
Target:  5'- cGGggGCACcgAGCGCcacgGGcGGCCCGCGggGAc -3'
miRNA:   3'- -CCa-UGUG--UCGCG----CC-CUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 21957 0.66 0.77641
Target:  5'- --gGCGgAGCGCGGGAugacgcgggcCCCGgGCa-- -3'
miRNA:   3'- ccaUGUgUCGCGCCCU----------GGGCgCGacu -5'
5461 5' -59.5 NC_001798.1 + 23521 0.67 0.700914
Target:  5'- ---cCGCGG-GCGGGACCCucgGCGCgGAc -3'
miRNA:   3'- ccauGUGUCgCGCCCUGGG---CGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 23647 0.68 0.691144
Target:  5'- cGGgcCGCcuggAGCGCcgccGGGCCCGCGCg-- -3'
miRNA:   3'- -CCauGUG----UCGCGc---CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 23787 0.66 0.767311
Target:  5'- gGGUACGuCAGCG-GGGAgCCGUGg--- -3'
miRNA:   3'- -CCAUGU-GUCGCgCCCUgGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 24807 0.75 0.300442
Target:  5'- uGGUGCugAugcgccuGCGCgGGGACCUGCGCgUGGc -3'
miRNA:   3'- -CCAUGugU-------CGCG-CCCUGGGCGCG-ACU- -5'
5461 5' -59.5 NC_001798.1 + 24903 0.68 0.671474
Target:  5'- uGGgcccgGCGCuGcCGCGGaGCCCGCGCcugcUGAg -3'
miRNA:   3'- -CCa----UGUGuC-GCGCCcUGGGCGCG----ACU- -5'
5461 5' -59.5 NC_001798.1 + 25958 0.8 0.147362
Target:  5'- cGUGCgcuggccgGCGGCGCGGGACCUGCGCc-- -3'
miRNA:   3'- cCAUG--------UGUCGCGCCCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 26336 0.66 0.767311
Target:  5'- gGGgcgcgACGCcguGCGCGGcGGCCCG-GCgGAg -3'
miRNA:   3'- -CCa----UGUGu--CGCGCC-CUGGGCgCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 26451 0.7 0.552983
Target:  5'- --gACGCGGaCGCGGG-CCCGCccccgcagauacGCUGGg -3'
miRNA:   3'- ccaUGUGUC-GCGCCCuGGGCG------------CGACU- -5'
5461 5' -59.5 NC_001798.1 + 27247 0.67 0.700914
Target:  5'- cGGgggAgGCGGcCGCGGGACCgcagccccguggCGCGCgGGg -3'
miRNA:   3'- -CCa--UgUGUC-GCGCCCUGG------------GCGCGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.