miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 49131 0.81 0.123636
Target:  5'- uGGgcuuCAGCGCGGGuCCCGCGCUGu -3'
miRNA:   3'- -CCauguGUCGCGCCCuGGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 25958 0.8 0.147362
Target:  5'- cGUGCgcuggccgGCGGCGCGGGACCUGCGCc-- -3'
miRNA:   3'- cCAUG--------UGUCGCGCCCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 105188 0.78 0.188457
Target:  5'- ---cCGCGGCgGCGGGGCCCGCGgUGGg -3'
miRNA:   3'- ccauGUGUCG-CGCCCUGGGCGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 30182 0.77 0.211058
Target:  5'- cGGgggACACGGCGCGGGGgucccgccucacgcCCCGCGCc-- -3'
miRNA:   3'- -CCa--UGUGUCGCGCCCU--------------GGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 24807 0.75 0.300442
Target:  5'- uGGUGCugAugcgccuGCGCgGGGACCUGCGCgUGGc -3'
miRNA:   3'- -CCAUGugU-------CGCG-CCCUGGGCGCG-ACU- -5'
5461 5' -59.5 NC_001798.1 + 117094 0.75 0.307934
Target:  5'- --aGCGCGGCGgGGGAgaaCGCGCUGAc -3'
miRNA:   3'- ccaUGUGUCGCgCCCUgg-GCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 134681 0.74 0.336375
Target:  5'- gGGU-CACGGCGCGGGugCUGCuGCc-- -3'
miRNA:   3'- -CCAuGUGUCGCGCCCugGGCG-CGacu -5'
5461 5' -59.5 NC_001798.1 + 1537 0.74 0.343779
Target:  5'- gGGaGCACGGCGCGGcGguACUCGCGCgggGAc -3'
miRNA:   3'- -CCaUGUGUCGCGCC-C--UGGGCGCGa--CU- -5'
5461 5' -59.5 NC_001798.1 + 95011 0.72 0.414707
Target:  5'- --aGgGCGGCGCGGGccuggaggccgggGCCCGCGCgcUGAu -3'
miRNA:   3'- ccaUgUGUCGCGCCC-------------UGGGCGCG--ACU- -5'
5461 5' -59.5 NC_001798.1 + 111773 0.72 0.415554
Target:  5'- cGGUugGgGGCGCGGGuGCCCGUGa--- -3'
miRNA:   3'- -CCAugUgUCGCGCCC-UGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 44194 0.72 0.424079
Target:  5'- uGGUGCacgaACAGCGUGGuGAggCCGCGCUGc -3'
miRNA:   3'- -CCAUG----UGUCGCGCC-CUg-GGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 132700 0.72 0.450268
Target:  5'- --gGCGCAgGCGCGGGGgUCGCGCa-- -3'
miRNA:   3'- ccaUGUGU-CGCGCCCUgGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 153233 0.72 0.450268
Target:  5'- cGGgccCGCGGCgGCGgaGGACCCGCGCg-- -3'
miRNA:   3'- -CCau-GUGUCG-CGC--CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 9144 0.71 0.486518
Target:  5'- cGGcACGCgGGCGCGGcGccGCCCGCGCcGGg -3'
miRNA:   3'- -CCaUGUG-UCGCGCC-C--UGGGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 47584 0.71 0.495797
Target:  5'- cGGgaaGCGCcGCGCGGGACCCacgaggaGCUGu -3'
miRNA:   3'- -CCa--UGUGuCGCGCCCUGGGcg-----CGACu -5'
5461 5' -59.5 NC_001798.1 + 31660 0.71 0.495797
Target:  5'- cGG-ACGCGGC-CGGG-CCCGCGCc-- -3'
miRNA:   3'- -CCaUGUGUCGcGCCCuGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 36394 0.71 0.502339
Target:  5'- -cUGCGCGGCGcCGGGGCCCcccugccgggcgggGCGgUGGg -3'
miRNA:   3'- ccAUGUGUCGC-GCCCUGGG--------------CGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 130311 0.71 0.505155
Target:  5'- --gGCGCGGUGcCGGGugUCGCGCa-- -3'
miRNA:   3'- ccaUGUGUCGC-GCCCugGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 52419 0.7 0.543295
Target:  5'- cGUGCugGGCGCGGccGugUaCGCGCUGc -3'
miRNA:   3'- cCAUGugUCGCGCC--CugG-GCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 121548 0.7 0.543295
Target:  5'- -cUGCGCcuGGCGUGGGGCCCGUGg--- -3'
miRNA:   3'- ccAUGUG--UCGCGCCCUGGGCGCgacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.