miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5462 3' -58.6 NC_001798.1 + 153003 0.69 0.700104
Target:  5'- ---gGCGCGGggcgGUCgCCGGGGCggaGUCc -3'
miRNA:   3'- ccagCGCGCCa---UAG-GGCCCUGag-CAG- -5'
5462 3' -58.6 NC_001798.1 + 150632 0.67 0.775409
Target:  5'- gGGcCGCGCGGggcUGUCUcgCGGGGggCGUCc -3'
miRNA:   3'- -CCaGCGCGCC---AUAGG--GCCCUgaGCAG- -5'
5462 3' -58.6 NC_001798.1 + 149669 0.69 0.700104
Target:  5'- gGGUCGCG-GGc--CCCGGG-CUCGg- -3'
miRNA:   3'- -CCAGCGCgCCauaGGGCCCuGAGCag -5'
5462 3' -58.6 NC_001798.1 + 135985 0.71 0.581919
Target:  5'- cGUCGUGCGcGUauGUCCCGgGGGCggggaGUCg -3'
miRNA:   3'- cCAGCGCGC-CA--UAGGGC-CCUGag---CAG- -5'
5462 3' -58.6 NC_001798.1 + 135442 0.67 0.801901
Target:  5'- cGGUCuGCgGCGGca--CCGGGGCUgCGUUc -3'
miRNA:   3'- -CCAG-CG-CGCCauagGGCCCUGA-GCAG- -5'
5462 3' -58.6 NC_001798.1 + 130311 0.67 0.810455
Target:  5'- ---gGCGCGGUG--CCGGGugUCG-Cg -3'
miRNA:   3'- ccagCGCGCCAUagGGCCCugAGCaG- -5'
5462 3' -58.6 NC_001798.1 + 128946 0.68 0.74784
Target:  5'- -uUCGCGCccGGgcgcGUUCCGGGcccggaggaggcGCUCGUCa -3'
miRNA:   3'- ccAGCGCG--CCa---UAGGGCCC------------UGAGCAG- -5'
5462 3' -58.6 NC_001798.1 + 126359 0.71 0.56238
Target:  5'- cGGcuUCGCGCGGgacUGUCCCGauGGcgagugagccGCUCGUCu -3'
miRNA:   3'- -CC--AGCGCGCC---AUAGGGC--CC----------UGAGCAG- -5'
5462 3' -58.6 NC_001798.1 + 124320 0.68 0.728972
Target:  5'- aGGUCGuCGUGGg---CCGGGACggcgcggaaagCGUCa -3'
miRNA:   3'- -CCAGC-GCGCCauagGGCCCUGa----------GCAG- -5'
5462 3' -58.6 NC_001798.1 + 119009 0.72 0.495693
Target:  5'- aGUCGCGCGGcUGgucgCCCGGGGCaucCGg- -3'
miRNA:   3'- cCAGCGCGCC-AUa---GGGCCCUGa--GCag -5'
5462 3' -58.6 NC_001798.1 + 111815 0.67 0.766328
Target:  5'- cGGUCGCG-GGcGUCCaGGGGCUgG-Cg -3'
miRNA:   3'- -CCAGCGCgCCaUAGGgCCCUGAgCaG- -5'
5462 3' -58.6 NC_001798.1 + 104564 0.68 0.728019
Target:  5'- gGGUUcacgcggGUGCuGGUGUCUCGGGGaaCGUCg -3'
miRNA:   3'- -CCAG-------CGCG-CCAUAGGGCCCUgaGCAG- -5'
5462 3' -58.6 NC_001798.1 + 102249 0.66 0.849282
Target:  5'- -cUCGCcCGGguaauacgggaaGUCCCGGuccGGCUCGUCa -3'
miRNA:   3'- ccAGCGcGCCa-----------UAGGGCC---CUGAGCAG- -5'
5462 3' -58.6 NC_001798.1 + 102202 0.68 0.728972
Target:  5'- uGG-CGCGCGGcg-CgCCGGGAgUCGa- -3'
miRNA:   3'- -CCaGCGCGCCauaG-GGCCCUgAGCag -5'
5462 3' -58.6 NC_001798.1 + 101844 0.66 0.858354
Target:  5'- gGGagGCGUGG-GUCCCGGcGGCggCGg- -3'
miRNA:   3'- -CCagCGCGCCaUAGGGCC-CUGa-GCag -5'
5462 3' -58.6 NC_001798.1 + 75349 0.66 0.850812
Target:  5'- cGGUCGCcguaccCGGcgcaCCCGGGGCUguuggagcucugCGUCa -3'
miRNA:   3'- -CCAGCGc-----GCCaua-GGGCCCUGA------------GCAG- -5'
5462 3' -58.6 NC_001798.1 + 66867 0.66 0.827102
Target:  5'- aGUCGC-CGGgg-CgCCGGGGCUUGg- -3'
miRNA:   3'- cCAGCGcGCCauaG-GGCCCUGAGCag -5'
5462 3' -58.6 NC_001798.1 + 61332 0.67 0.793204
Target:  5'- cGG-CGgGCuugGGUGUCCCGG-AC-CGUCa -3'
miRNA:   3'- -CCaGCgCG---CCAUAGGGCCcUGaGCAG- -5'
5462 3' -58.6 NC_001798.1 + 58283 0.66 0.858354
Target:  5'- gGGUC-CGUGagGUCCCGGGGCgCGa- -3'
miRNA:   3'- -CCAGcGCGCcaUAGGGCCCUGaGCag -5'
5462 3' -58.6 NC_001798.1 + 52043 0.67 0.766328
Target:  5'- gGGUgCGCGCGc--UCCUGGGGCgcgacUGUCg -3'
miRNA:   3'- -CCA-GCGCGCcauAGGGCCCUGa----GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.