miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5462 5' -55.6 NC_001798.1 + 90845 0.66 0.917773
Target:  5'- -uGACG-GUCCCGGc---GGGCGUGa -3'
miRNA:   3'- uuCUGCuCAGGGCCaucuCCCGUAUg -5'
5462 5' -55.6 NC_001798.1 + 4338 0.66 0.914257
Target:  5'- -uGAUGAGUCagaggcggccgagcgCCGGcGGGGGGCGcGCc -3'
miRNA:   3'- uuCUGCUCAG---------------GGCCaUCUCCCGUaUG- -5'
5462 5' -55.6 NC_001798.1 + 21531 0.66 0.910043
Target:  5'- uGGAUGGGUCCUcgcgguacguacagGGUGGGGGGgGg-- -3'
miRNA:   3'- uUCUGCUCAGGG--------------CCAUCUCCCgUaug -5'
5462 5' -55.6 NC_001798.1 + 97506 0.66 0.906337
Target:  5'- gAGGAaGAGcCCCGGgccgccgcggaggagGGGGGGCGgagGCg -3'
miRNA:   3'- -UUCUgCUCaGGGCCa--------------UCUCCCGUa--UG- -5'
5462 5' -55.6 NC_001798.1 + 148503 0.66 0.905711
Target:  5'- ------cGUcCCCGGgggcAGAGGGCGUGCa -3'
miRNA:   3'- uucugcuCA-GGGCCa---UCUCCCGUAUG- -5'
5462 5' -55.6 NC_001798.1 + 133588 0.66 0.905711
Target:  5'- cAGACGuuUCCCGGggcGGGGCGc-- -3'
miRNA:   3'- uUCUGCucAGGGCCaucUCCCGUaug -5'
5462 5' -55.6 NC_001798.1 + 71896 0.66 0.885822
Target:  5'- cAAGAucCGcuUCCCGGcccUGGAGGGCAUcCa -3'
miRNA:   3'- -UUCU--GCucAGGGCC---AUCUCCCGUAuG- -5'
5462 5' -55.6 NC_001798.1 + 2998 0.66 0.885822
Target:  5'- --cGCGGGcCCCGGgcgcGGGGGCGcgGCg -3'
miRNA:   3'- uucUGCUCaGGGCCau--CUCCCGUa-UG- -5'
5462 5' -55.6 NC_001798.1 + 80537 0.66 0.885822
Target:  5'- cAGACGcucGG-CCCGGcgGGGGGGCGcgagGCg -3'
miRNA:   3'- uUCUGC---UCaGGGCCa-UCUCCCGUa---UG- -5'
5462 5' -55.6 NC_001798.1 + 15825 0.67 0.878726
Target:  5'- uGAGGCGccgCCCGGUucGGGGGGCc--- -3'
miRNA:   3'- -UUCUGCucaGGGCCA--UCUCCCGuaug -5'
5462 5' -55.6 NC_001798.1 + 88014 0.67 0.874361
Target:  5'- -cGGCGucUCCCGGgggcgcuuggccggGGAGGGCAggGCc -3'
miRNA:   3'- uuCUGCucAGGGCCa-------------UCUCCCGUa-UG- -5'
5462 5' -55.6 NC_001798.1 + 12345 0.67 0.871406
Target:  5'- cGGACGGGUCgaGGUGGcuguGGGCGc-- -3'
miRNA:   3'- uUCUGCUCAGggCCAUCu---CCCGUaug -5'
5462 5' -55.6 NC_001798.1 + 34729 0.67 0.863865
Target:  5'- aGGGGCGAGggucgggCCCGGgAGcGGGGCGg-- -3'
miRNA:   3'- -UUCUGCUCa------GGGCCaUC-UCCCGUaug -5'
5462 5' -55.6 NC_001798.1 + 138561 0.67 0.84734
Target:  5'- cAGGCG-GUCgCCGGUccacaggGGGGGGCAc-- -3'
miRNA:   3'- uUCUGCuCAG-GGCCA-------UCUCCCGUaug -5'
5462 5' -55.6 NC_001798.1 + 15904 0.67 0.839984
Target:  5'- cGGGCGGGg-UgGGaAGGGGGCGUACg -3'
miRNA:   3'- uUCUGCUCagGgCCaUCUCCCGUAUG- -5'
5462 5' -55.6 NC_001798.1 + 87983 0.68 0.831627
Target:  5'- uGGACGcGccUCCCGGggGGucGGCAUGCg -3'
miRNA:   3'- uUCUGCuC--AGGGCCa-UCucCCGUAUG- -5'
5462 5' -55.6 NC_001798.1 + 146078 0.68 0.831627
Target:  5'- gGGGAgGGGUCCgGGgcgAGGcGGGCGgGCg -3'
miRNA:   3'- -UUCUgCUCAGGgCCa--UCU-CCCGUaUG- -5'
5462 5' -55.6 NC_001798.1 + 95922 0.68 0.823083
Target:  5'- -uGGCGAGUCCUGGgu--GGGUGUGu -3'
miRNA:   3'- uuCUGCUCAGGGCCaucuCCCGUAUg -5'
5462 5' -55.6 NC_001798.1 + 45917 0.68 0.823083
Target:  5'- -cGGCGGGUCUCGG-GGGGuGGCGgucGCg -3'
miRNA:   3'- uuCUGCUCAGGGCCaUCUC-CCGUa--UG- -5'
5462 5' -55.6 NC_001798.1 + 9952 0.68 0.814362
Target:  5'- gGGGGCGuAGUCCUGGaacAGccGGCGUACu -3'
miRNA:   3'- -UUCUGC-UCAGGGCCa--UCucCCGUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.