miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5462 5' -55.6 NC_001798.1 + 80537 0.66 0.885822
Target:  5'- cAGACGcucGG-CCCGGcgGGGGGGCGcgagGCg -3'
miRNA:   3'- uUCUGC---UCaGGGCCa-UCUCCCGUa---UG- -5'
5462 5' -55.6 NC_001798.1 + 148503 0.66 0.905711
Target:  5'- ------cGUcCCCGGgggcAGAGGGCGUGCa -3'
miRNA:   3'- uucugcuCA-GGGCCa---UCUCCCGUAUG- -5'
5462 5' -55.6 NC_001798.1 + 133588 0.66 0.905711
Target:  5'- cAGACGuuUCCCGGggcGGGGCGc-- -3'
miRNA:   3'- uUCUGCucAGGGCCaucUCCCGUaug -5'
5462 5' -55.6 NC_001798.1 + 97506 0.66 0.906337
Target:  5'- gAGGAaGAGcCCCGGgccgccgcggaggagGGGGGGCGgagGCg -3'
miRNA:   3'- -UUCUgCUCaGGGCCa--------------UCUCCCGUa--UG- -5'
5462 5' -55.6 NC_001798.1 + 21531 0.66 0.910043
Target:  5'- uGGAUGGGUCCUcgcgguacguacagGGUGGGGGGgGg-- -3'
miRNA:   3'- uUCUGCUCAGGG--------------CCAUCUCCCgUaug -5'
5462 5' -55.6 NC_001798.1 + 4338 0.66 0.914257
Target:  5'- -uGAUGAGUCagaggcggccgagcgCCGGcGGGGGGCGcGCc -3'
miRNA:   3'- uuCUGCUCAG---------------GGCCaUCUCCCGUaUG- -5'
5462 5' -55.6 NC_001798.1 + 90845 0.66 0.917773
Target:  5'- -uGACG-GUCCCGGc---GGGCGUGa -3'
miRNA:   3'- uuCUGCuCAGGGCCaucuCCCGUAUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.