Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5462 | 5' | -55.6 | NC_001798.1 | + | 80537 | 0.66 | 0.885822 |
Target: 5'- cAGACGcucGG-CCCGGcgGGGGGGCGcgagGCg -3' miRNA: 3'- uUCUGC---UCaGGGCCa-UCUCCCGUa---UG- -5' |
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5462 | 5' | -55.6 | NC_001798.1 | + | 148503 | 0.66 | 0.905711 |
Target: 5'- ------cGUcCCCGGgggcAGAGGGCGUGCa -3' miRNA: 3'- uucugcuCA-GGGCCa---UCUCCCGUAUG- -5' |
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5462 | 5' | -55.6 | NC_001798.1 | + | 133588 | 0.66 | 0.905711 |
Target: 5'- cAGACGuuUCCCGGggcGGGGCGc-- -3' miRNA: 3'- uUCUGCucAGGGCCaucUCCCGUaug -5' |
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5462 | 5' | -55.6 | NC_001798.1 | + | 97506 | 0.66 | 0.906337 |
Target: 5'- gAGGAaGAGcCCCGGgccgccgcggaggagGGGGGGCGgagGCg -3' miRNA: 3'- -UUCUgCUCaGGGCCa--------------UCUCCCGUa--UG- -5' |
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5462 | 5' | -55.6 | NC_001798.1 | + | 21531 | 0.66 | 0.910043 |
Target: 5'- uGGAUGGGUCCUcgcgguacguacagGGUGGGGGGgGg-- -3' miRNA: 3'- uUCUGCUCAGGG--------------CCAUCUCCCgUaug -5' |
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5462 | 5' | -55.6 | NC_001798.1 | + | 4338 | 0.66 | 0.914257 |
Target: 5'- -uGAUGAGUCagaggcggccgagcgCCGGcGGGGGGCGcGCc -3' miRNA: 3'- uuCUGCUCAG---------------GGCCaUCUCCCGUaUG- -5' |
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5462 | 5' | -55.6 | NC_001798.1 | + | 90845 | 0.66 | 0.917773 |
Target: 5'- -uGACG-GUCCCGGc---GGGCGUGa -3' miRNA: 3'- uuCUGCuCAGGGCCaucuCCCGUAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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