miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 3' -60.4 NC_001798.1 + 178 0.78 0.156929
Target:  5'- cCGCGGgGCUgccuUCCCGCGGGCgcccccgcGCGGCUUu -3'
miRNA:   3'- -GCGCCgCGA----AGGGCGCCUG--------UGCUGAA- -5'
5463 3' -60.4 NC_001798.1 + 154516 0.78 0.156929
Target:  5'- cCGCGGgGCUgccuUCCCGCGGGCgcccccgcGCGGCUUu -3'
miRNA:   3'- -GCGCCgCGA----AGGGCGCCUG--------UGCUGAA- -5'
5463 3' -60.4 NC_001798.1 + 3331 0.77 0.181891
Target:  5'- gGCGGCggGCUUCCCGCGGGCGuCGuCg- -3'
miRNA:   3'- gCGCCG--CGAAGGGCGCCUGU-GCuGaa -5'
5463 3' -60.4 NC_001798.1 + 105188 0.76 0.231306
Target:  5'- cCGCGGCgGCggggCCCGCGGugGgCGACg- -3'
miRNA:   3'- -GCGCCG-CGaa--GGGCGCCugU-GCUGaa -5'
5463 3' -60.4 NC_001798.1 + 149980 0.74 0.278601
Target:  5'- gGgGGCGCggcgCCCGCGGACGCcggGGCg- -3'
miRNA:   3'- gCgCCGCGaa--GGGCGCCUGUG---CUGaa -5'
5463 3' -60.4 NC_001798.1 + 70293 0.74 0.278601
Target:  5'- gGCGGCGUUUCUguUGuCGGGCGCGGCg- -3'
miRNA:   3'- gCGCCGCGAAGG--GC-GCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 2672 0.74 0.311898
Target:  5'- cCGCGGCGCggag-GCGGGCGCGGCg- -3'
miRNA:   3'- -GCGCCGCGaagggCGCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 24702 0.74 0.311898
Target:  5'- cCGCGcccccGCGCccggggCCCGCGGGCGCGGCc- -3'
miRNA:   3'- -GCGC-----CGCGaa----GGGCGCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 3255 0.74 0.311898
Target:  5'- cCGCGGCGCcguagCCgGCGGGCACcGCg- -3'
miRNA:   3'- -GCGCCGCGaa---GGgCGCCUGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 52046 0.73 0.326038
Target:  5'- uGCGcGCGC-UCCUG-GGGCGCGACUg -3'
miRNA:   3'- gCGC-CGCGaAGGGCgCCUGUGCUGAa -5'
5463 3' -60.4 NC_001798.1 + 81601 0.73 0.355727
Target:  5'- aCGgGGCGCgugCCCGUGGccccuCGCGACg- -3'
miRNA:   3'- -GCgCCGCGaa-GGGCGCCu----GUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 24306 0.73 0.355727
Target:  5'- aCGCGGCGCUgaCCG-GGGCGCGAa-- -3'
miRNA:   3'- -GCGCCGCGAagGGCgCCUGUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 81732 0.72 0.363441
Target:  5'- gCGCGuGCGCaggUCCCGcCGGACGCGuGCc- -3'
miRNA:   3'- -GCGC-CGCGa--AGGGC-GCCUGUGC-UGaa -5'
5463 3' -60.4 NC_001798.1 + 1733 0.72 0.369695
Target:  5'- uGCGGCGCaggUCCCGCGccgccggccagcGCACGGCg- -3'
miRNA:   3'- gCGCCGCGa--AGGGCGCc-----------UGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 26574 0.72 0.371269
Target:  5'- cCGCcgaGGCGCgagCCCGUGGACAUgGACg- -3'
miRNA:   3'- -GCG---CCGCGaa-GGGCGCCUGUG-CUGaa -5'
5463 3' -60.4 NC_001798.1 + 54672 0.72 0.379212
Target:  5'- cCGCGGCGCgcccgCUCGCGGcucaGCGCGAg-- -3'
miRNA:   3'- -GCGCCGCGaa---GGGCGCC----UGUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 153666 0.72 0.379212
Target:  5'- gCGCGGCGCgu-CCGCGGGCgGgGACg- -3'
miRNA:   3'- -GCGCCGCGaagGGCGCCUG-UgCUGaa -5'
5463 3' -60.4 NC_001798.1 + 83351 0.72 0.395436
Target:  5'- cCGCGGCGUcgCCCGCGaACAUaGGCUg -3'
miRNA:   3'- -GCGCCGCGaaGGGCGCcUGUG-CUGAa -5'
5463 3' -60.4 NC_001798.1 + 4058 0.72 0.395436
Target:  5'- gGCGGCGCUccaggcggCCCGCGGuCGCcGCg- -3'
miRNA:   3'- gCGCCGCGAa-------GGGCGCCuGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 23215 0.72 0.395436
Target:  5'- aCGCGGgcCGCUgggUCCGCGGACcggagACGACg- -3'
miRNA:   3'- -GCGCC--GCGAa--GGGCGCCUG-----UGCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.