miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 3' -60.4 NC_001798.1 + 136 0.67 0.677688
Target:  5'- aGcCGGcCGCUccCCCGCGGGCGCcGCc- -3'
miRNA:   3'- gC-GCC-GCGAa-GGGCGCCUGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 178 0.78 0.156929
Target:  5'- cCGCGGgGCUgccuUCCCGCGGGCgcccccgcGCGGCUUu -3'
miRNA:   3'- -GCGCCgCGA----AGGGCGCCUG--------UGCUGAA- -5'
5463 3' -60.4 NC_001798.1 + 1199 0.66 0.730223
Target:  5'- cCGCGGCcagcaccguccccgcGCggCCCGCGG-C-CGACg- -3'
miRNA:   3'- -GCGCCG---------------CGaaGGGCGCCuGuGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 1733 0.72 0.369695
Target:  5'- uGCGGCGCaggUCCCGCGccgccggccagcGCACGGCg- -3'
miRNA:   3'- gCGCCGCGa--AGGGCGCc-----------UGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 1836 0.66 0.716773
Target:  5'- gGCGG-GCcagUCCGCGGcgcGCACGGCg- -3'
miRNA:   3'- gCGCCgCGaa-GGGCGCC---UGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 2112 0.66 0.70124
Target:  5'- -cCGGCGCggCCCGCGGccagguccucgcccgGCAgCGGCg- -3'
miRNA:   3'- gcGCCGCGaaGGGCGCC---------------UGU-GCUGaa -5'
5463 3' -60.4 NC_001798.1 + 2211 0.66 0.726395
Target:  5'- gCGCGGCGCagcgggCCCgaggcgcgcaGCGGGCcgaagGCGGCg- -3'
miRNA:   3'- -GCGCCGCGaa----GGG----------CGCCUG-----UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 2544 0.68 0.608222
Target:  5'- gGgGGCGCggccCCCGCGGGagggGCGGCc- -3'
miRNA:   3'- gCgCCGCGaa--GGGCGCCUg---UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 2672 0.74 0.311898
Target:  5'- cCGCGGCGCggag-GCGGGCGCGGCg- -3'
miRNA:   3'- -GCGCCGCGaagggCGCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 2982 0.7 0.486547
Target:  5'- gGCGGgGCggccggCCCGCGGGCcccgggcgcgggggcGCGGCg- -3'
miRNA:   3'- gCGCCgCGaa----GGGCGCCUG---------------UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 3202 0.66 0.7454
Target:  5'- gGcCGGCGCggag-GCGGGCGCGGCg- -3'
miRNA:   3'- gC-GCCGCGaagggCGCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 3255 0.74 0.311898
Target:  5'- cCGCGGCGCcguagCCgGCGGGCACcGCg- -3'
miRNA:   3'- -GCGCCGCGaa---GGgCGCCUGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 3331 0.77 0.181891
Target:  5'- gGCGGCggGCUUCCCGCGGGCGuCGuCg- -3'
miRNA:   3'- gCGCCG--CGAAGGGCGCCUGU-GCuGaa -5'
5463 3' -60.4 NC_001798.1 + 4058 0.72 0.395436
Target:  5'- gGCGGCGCUccaggcggCCCGCGGuCGCcGCg- -3'
miRNA:   3'- gCGCCGCGAa-------GGGCGCCuGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 4199 0.68 0.588419
Target:  5'- cCGCGGCGUggUCUGCGG-CGCuGGCg- -3'
miRNA:   3'- -GCGCCGCGaaGGGCGCCuGUG-CUGaa -5'
5463 3' -60.4 NC_001798.1 + 9154 0.69 0.558954
Target:  5'- gCGCGGCGCcgCCCGCgccgggGGGCAgGGuCUc -3'
miRNA:   3'- -GCGCCGCGaaGGGCG------CCUGUgCU-GAa -5'
5463 3' -60.4 NC_001798.1 + 11613 0.69 0.558954
Target:  5'- gGCGGgGCUaucucgccgCUCGCGGGCGCGGg-- -3'
miRNA:   3'- gCGCCgCGAa--------GGGCGCCUGUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 22095 0.69 0.519407
Target:  5'- gGCGGaGCcgCCCGCGGACcaacgggGCGACc- -3'
miRNA:   3'- gCGCCgCGaaGGGCGCCUG-------UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 23215 0.72 0.395436
Target:  5'- aCGCGGgcCGCUgggUCCGCGGACcggagACGACg- -3'
miRNA:   3'- -GCGCC--GCGAa--GGGCGCCUG-----UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 23635 0.67 0.647974
Target:  5'- cCGCGGCGa---CCGCGGGC-CGcCUg -3'
miRNA:   3'- -GCGCCGCgaagGGCGCCUGuGCuGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.