Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5463 | 5' | -51.8 | NC_001798.1 | + | 97542 | 0.76 | 0.665939 |
Target: 5'- cGGAGG-CGUGG-Cg--CGGGGACGCCc -3' miRNA: 3'- -UCUCCaGUACCaGauaGCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 58534 | 0.73 | 0.776609 |
Target: 5'- cAGGGGUcCGUGGUCUGUUGGccgcucGGCGuCCu -3' miRNA: 3'- -UCUCCA-GUACCAGAUAGCCu-----CUGU-GG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 39378 | 0.72 | 0.839385 |
Target: 5'- cGGGGUCgAUGGU--GUCGGcagaGGGCGCCu -3' miRNA: 3'- uCUCCAG-UACCAgaUAGCC----UCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 4390 | 0.71 | 0.892609 |
Target: 5'- uGGuGGUgGUGGUggUGUCGGcgGGGCGCCg -3' miRNA: 3'- -UCuCCAgUACCAg-AUAGCC--UCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 91548 | 0.7 | 0.911342 |
Target: 5'- cGGGGUUcgagagccaguguGUGGUgUccgCGGGGGCGCCg -3' miRNA: 3'- uCUCCAG-------------UACCAgAua-GCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 15486 | 0.7 | 0.920221 |
Target: 5'- gGGGGGUCGUGGgggCUggugugguggggggcGUuuucgcugCGGAGGCGCUg -3' miRNA: 3'- -UCUCCAGUACCa--GA---------------UA--------GCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 16755 | 0.7 | 0.923616 |
Target: 5'- gGGGGGaUUAauUGGUC---CGGGGACACCc -3' miRNA: 3'- -UCUCC-AGU--ACCAGauaGCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 31550 | 0.7 | 0.929074 |
Target: 5'- gGGAGGUCugccacaGUC-GUCGGGGcGCGCCg -3' miRNA: 3'- -UCUCCAGuac----CAGaUAGCCUC-UGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 15365 | 0.7 | 0.929074 |
Target: 5'- aGGGGGgaaucggcCGUGGgcgCgg-CGGAGGCGCCc -3' miRNA: 3'- -UCUCCa-------GUACCa--GauaGCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 78944 | 0.69 | 0.938759 |
Target: 5'- cGAGGUCuggGGUCgcUUuggccgcguccggGGGGGCGCCu -3' miRNA: 3'- uCUCCAGua-CCAGauAG-------------CCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 31040 | 0.69 | 0.939244 |
Target: 5'- cGGGGGUCGggcgggGGUCgggCGGgggucGGGCACUa -3' miRNA: 3'- -UCUCCAGUa-----CCAGauaGCC-----UCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 4187 | 0.69 | 0.946667 |
Target: 5'- cGAGGgucccgcccgcggCGUGGUCUGcggcgcuggCGGGGGCGCg -3' miRNA: 3'- uCUCCa------------GUACCAGAUa--------GCCUCUGUGg -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 25890 | 0.69 | 0.948425 |
Target: 5'- cGAcGGgccCGUGGUCUcgCGGcAGcACGCCu -3' miRNA: 3'- uCU-CCa--GUACCAGAuaGCC-UC-UGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 87997 | 0.68 | 0.960386 |
Target: 5'- gGGGGGUCGgcaugcgacgGcGUCUccCGGGGGCGCUu -3' miRNA: 3'- -UCUCCAGUa---------C-CAGAuaGCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 11440 | 0.68 | 0.963907 |
Target: 5'- cGGGGUUGUaaaUCUGgccgCGGGGGCGCCu -3' miRNA: 3'- uCUCCAGUAcc-AGAUa---GCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 110326 | 0.68 | 0.963907 |
Target: 5'- gGGAGGUCAUgucGGUgCUGcUGGuGGACACg -3' miRNA: 3'- -UCUCCAGUA---CCA-GAUaGCC-UCUGUGg -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 78547 | 0.68 | 0.967203 |
Target: 5'- -cGGGUCAUGGcgggcCUGcgGGAGGCGCUg -3' miRNA: 3'- ucUCCAGUACCa----GAUagCCUCUGUGG- -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 62974 | 0.67 | 0.973144 |
Target: 5'- cGGGGUUcUGGUCggcgcuugauuUAUCGGuuGGACGCg -3' miRNA: 3'- uCUCCAGuACCAG-----------AUAGCC--UCUGUGg -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 43680 | 0.67 | 0.975547 |
Target: 5'- uGGGGUCGUGGgugGUCacggcccGGAGAUGCg -3' miRNA: 3'- uCUCCAGUACCagaUAG-------CCUCUGUGg -5' |
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5463 | 5' | -51.8 | NC_001798.1 | + | 27016 | 0.67 | 0.975804 |
Target: 5'- cGGGGGUCGggcgggcgggGGUCgggCGGGcGGCACg -3' miRNA: 3'- -UCUCCAGUa---------CCAGauaGCCU-CUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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