miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 5' -51.8 NC_001798.1 + 4187 0.69 0.946667
Target:  5'- cGAGGgucccgcccgcggCGUGGUCUGcggcgcuggCGGGGGCGCg -3'
miRNA:   3'- uCUCCa------------GUACCAGAUa--------GCCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 4390 0.71 0.892609
Target:  5'- uGGuGGUgGUGGUggUGUCGGcgGGGCGCCg -3'
miRNA:   3'- -UCuCCAgUACCAg-AUAGCC--UCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 9417 0.67 0.982626
Target:  5'- gGGAGaGUCG-GGUCUcucCGGAGGguCCu -3'
miRNA:   3'- -UCUC-CAGUaCCAGAua-GCCUCUguGG- -5'
5463 5' -51.8 NC_001798.1 + 11440 0.68 0.963907
Target:  5'- cGGGGUUGUaaaUCUGgccgCGGGGGCGCCu -3'
miRNA:   3'- uCUCCAGUAcc-AGAUa---GCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 15365 0.7 0.929074
Target:  5'- aGGGGGgaaucggcCGUGGgcgCgg-CGGAGGCGCCc -3'
miRNA:   3'- -UCUCCa-------GUACCa--GauaGCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 15486 0.7 0.920221
Target:  5'- gGGGGGUCGUGGgggCUggugugguggggggcGUuuucgcugCGGAGGCGCUg -3'
miRNA:   3'- -UCUCCAGUACCa--GA---------------UA--------GCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 16130 0.66 0.990392
Target:  5'- cGGGGUUggGGgcggaauaccaUAcCGGGGGCACCg -3'
miRNA:   3'- uCUCCAGuaCCag---------AUaGCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 16755 0.7 0.923616
Target:  5'- gGGGGGaUUAauUGGUC---CGGGGACACCc -3'
miRNA:   3'- -UCUCC-AGU--ACCAGauaGCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 25890 0.69 0.948425
Target:  5'- cGAcGGgccCGUGGUCUcgCGGcAGcACGCCu -3'
miRNA:   3'- uCU-CCa--GUACCAGAuaGCC-UC-UGUGG- -5'
5463 5' -51.8 NC_001798.1 + 27016 0.67 0.975804
Target:  5'- cGGGGGUCGggcgggcgggGGUCgggCGGGcGGCACg -3'
miRNA:   3'- -UCUCCAGUa---------CCAGauaGCCU-CUGUGg -5'
5463 5' -51.8 NC_001798.1 + 31040 0.69 0.939244
Target:  5'- cGGGGGUCGggcgggGGUCgggCGGgggucGGGCACUa -3'
miRNA:   3'- -UCUCCAGUa-----CCAGauaGCC-----UCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 31550 0.7 0.929074
Target:  5'- gGGAGGUCugccacaGUC-GUCGGGGcGCGCCg -3'
miRNA:   3'- -UCUCCAGuac----CAGaUAGCCUC-UGUGG- -5'
5463 5' -51.8 NC_001798.1 + 33383 0.66 0.987887
Target:  5'- uGGGGGUgGUGGgcaggaGUgGGAGgGCGCCu -3'
miRNA:   3'- -UCUCCAgUACCaga---UAgCCUC-UGUGG- -5'
5463 5' -51.8 NC_001798.1 + 36436 0.66 0.991822
Target:  5'- cGGGGUCggGGUCgcggCGGGGAa--- -3'
miRNA:   3'- uCUCCAGuaCCAGaua-GCCUCUgugg -5'
5463 5' -51.8 NC_001798.1 + 38184 0.66 0.989334
Target:  5'- uGGGGcCGcUGGUCgagcaGGAGGCGCg -3'
miRNA:   3'- uCUCCaGU-ACCAGauag-CCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 39378 0.72 0.839385
Target:  5'- cGGGGUCgAUGGU--GUCGGcagaGGGCGCCu -3'
miRNA:   3'- uCUCCAG-UACCAgaUAGCC----UCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 43680 0.67 0.975547
Target:  5'- uGGGGUCGUGGgugGUCacggcccGGAGAUGCg -3'
miRNA:   3'- uCUCCAGUACCagaUAG-------CCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 52222 0.66 0.989334
Target:  5'- cAGAcGGUCcaguggcucucgGUGGUCg--UGGGGGCGCg -3'
miRNA:   3'- -UCU-CCAG------------UACCAGauaGCCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 58534 0.73 0.776609
Target:  5'- cAGGGGUcCGUGGUCUGUUGGccgcucGGCGuCCu -3'
miRNA:   3'- -UCUCCA-GUACCAGAUAGCCu-----CUGU-GG- -5'
5463 5' -51.8 NC_001798.1 + 62974 0.67 0.973144
Target:  5'- cGGGGUUcUGGUCggcgcuugauuUAUCGGuuGGACGCg -3'
miRNA:   3'- uCUCCAGuACCAG-----------AUAGCC--UCUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.