miRNA display CGI


Results 41 - 60 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 3' -55.6 NC_001798.1 + 2270 0.66 0.902537
Target:  5'- gGGCGgGGCGGcGCAGC-GCGCgGCCa- -3'
miRNA:   3'- -UCGCgCUGCU-UGUUGuCGUGgUGGgu -5'
5464 3' -55.6 NC_001798.1 + 75548 0.66 0.902537
Target:  5'- cGCGC-AUGAGCcuGGCGGacgugGCCGCCCAc -3'
miRNA:   3'- uCGCGcUGCUUG--UUGUCg----UGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 82187 0.66 0.902537
Target:  5'- cGcCGCaGCG-GCGGCAGUGCCGCCUu -3'
miRNA:   3'- uC-GCGcUGCuUGUUGUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 108303 0.66 0.902537
Target:  5'- uGGCGCccccgGGCGAACucaaccugacuACGGCAUCcguGCCCAu -3'
miRNA:   3'- -UCGCG-----CUGCUUGu----------UGUCGUGG---UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 135556 0.66 0.902537
Target:  5'- uGCGCGccguacuuuCGGcCAACGGCAUaCGCCCGc -3'
miRNA:   3'- uCGCGCu--------GCUuGUUGUCGUG-GUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 142998 0.66 0.902537
Target:  5'- uGCGCGGCuugcGCGACcGaauaACCGCCCGc -3'
miRNA:   3'- uCGCGCUGcu--UGUUGuCg---UGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 26035 0.66 0.902537
Target:  5'- cGCGCGugGAggccGCGcACGcGCGCCuguACCCc -3'
miRNA:   3'- uCGCGCugCU----UGU-UGU-CGUGG---UGGGu -5'
5464 3' -55.6 NC_001798.1 + 143897 0.66 0.898683
Target:  5'- cGCGCuuGACGGucagggucguguucaACAACAGCACgccgucgcgaGCCCAc -3'
miRNA:   3'- uCGCG--CUGCU---------------UGUUGUCGUGg---------UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 25642 0.66 0.896067
Target:  5'- gAGCGCGGCGGGCuguccuGCcuGCugGCgGCCCu -3'
miRNA:   3'- -UCGCGCUGCUUGu-----UGu-CG--UGgUGGGu -5'
5464 3' -55.6 NC_001798.1 + 26412 0.66 0.896067
Target:  5'- gAGCcCGACG-GCGAC-GCGCC-CCCGc -3'
miRNA:   3'- -UCGcGCUGCuUGUUGuCGUGGuGGGU- -5'
5464 3' -55.6 NC_001798.1 + 51857 0.66 0.896067
Target:  5'- gGGCGCGGCucggagcucGACGACAGgGCgGCCgAg -3'
miRNA:   3'- -UCGCGCUGc--------UUGUUGUCgUGgUGGgU- -5'
5464 3' -55.6 NC_001798.1 + 91809 0.66 0.896067
Target:  5'- gGGCGUGGgGAcCGugGGCggggcccgacGCCGCCCc -3'
miRNA:   3'- -UCGCGCUgCUuGUugUCG----------UGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 127496 0.66 0.896067
Target:  5'- uGGCGUauGACGugccggagGGCAucCGGCGCCACCUu -3'
miRNA:   3'- -UCGCG--CUGC--------UUGUu-GUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 2918 0.66 0.896067
Target:  5'- cAGCGCGucgcgcACGAACcGCAGCucGCgCAgCCAg -3'
miRNA:   3'- -UCGCGC------UGCUUGuUGUCG--UG-GUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 78790 0.66 0.896067
Target:  5'- cAGCGCaccuucgaGACGcACccgcuaAGCGCCGCCCGc -3'
miRNA:   3'- -UCGCG--------CUGCuUGuug---UCGUGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 14185 0.66 0.895407
Target:  5'- -cCGCGugGG--GGCAGCACCucgccaacucgcgACCCAg -3'
miRNA:   3'- ucGCGCugCUugUUGUCGUGG-------------UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 126869 0.66 0.89408
Target:  5'- uGCGCG-CGAccacccccuccgucGCGACGGCccuCCACCa- -3'
miRNA:   3'- uCGCGCuGCU--------------UGUUGUCGu--GGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 28950 0.67 0.889364
Target:  5'- -cCGCGA-GGGCc-CGGCGCCGCCCc -3'
miRNA:   3'- ucGCGCUgCUUGuuGUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 146832 0.67 0.889364
Target:  5'- gGGCGCGGC-AGCAACgaacgcaggGGCccGCCGCCg- -3'
miRNA:   3'- -UCGCGCUGcUUGUUG---------UCG--UGGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 112012 0.67 0.889364
Target:  5'- cGCGCGcACGcGCAccccggucacCAGCACC-CCCGg -3'
miRNA:   3'- uCGCGC-UGCuUGUu---------GUCGUGGuGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.