miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 3' -55.6 NC_001798.1 + 9612 0.78 0.293184
Target:  5'- gAGgGCGGCcAGCAACAGgGCCGCCCc -3'
miRNA:   3'- -UCgCGCUGcUUGUUGUCgUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 153037 0.78 0.314348
Target:  5'- cGCGCGGCGGcgcGCGGuuggcCGGCGCCGCCCc -3'
miRNA:   3'- uCGCGCUGCU---UGUU-----GUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 142715 0.78 0.329088
Target:  5'- uGCGCG-CG-GCGACGGCACCGCCgGg -3'
miRNA:   3'- uCGCGCuGCuUGUUGUCGUGGUGGgU- -5'
5464 3' -55.6 NC_001798.1 + 138175 0.77 0.344332
Target:  5'- gGGCGCGACccGCGGcCGGUGCCGCCCu -3'
miRNA:   3'- -UCGCGCUGcuUGUU-GUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 24094 0.77 0.352142
Target:  5'- gGGCGCGGCGcGCAACAGCAgCuCCUu -3'
miRNA:   3'- -UCGCGCUGCuUGUUGUCGUgGuGGGu -5'
5464 3' -55.6 NC_001798.1 + 14375 0.76 0.384621
Target:  5'- gGGUGCGGCcccAACAGCAGCA-CACCCGa -3'
miRNA:   3'- -UCGCGCUGc--UUGUUGUCGUgGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 47654 0.76 0.401587
Target:  5'- cGCGCGACGAcuuccGCcGCGGCGCUGgCCCGa -3'
miRNA:   3'- uCGCGCUGCU-----UGuUGUCGUGGU-GGGU- -5'
5464 3' -55.6 NC_001798.1 + 59075 0.76 0.409376
Target:  5'- cGCGCGACaGAACGACAG-ACCccacgaaGCCCAg -3'
miRNA:   3'- uCGCGCUG-CUUGUUGUCgUGG-------UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 105199 0.76 0.410247
Target:  5'- gGGCccGCGGUGGGCGACGGCGCUGCCCc -3'
miRNA:   3'- -UCG--CGCUGCUUGUUGUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 2793 0.76 0.419023
Target:  5'- aGGCGCGGgCuccGCGGCAGCGCCggGCCCAg -3'
miRNA:   3'- -UCGCGCU-Gcu-UGUUGUCGUGG--UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 121715 0.75 0.427911
Target:  5'- cGcCGCGACGGagGCGGCGGC-CCACCUg -3'
miRNA:   3'- uC-GCGCUGCU--UGUUGUCGuGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 96982 0.75 0.443273
Target:  5'- -cCGCGGCGGGCGGCGGggccagggccggccCGCCGCCCGc -3'
miRNA:   3'- ucGCGCUGCUUGUUGUC--------------GUGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 3217 0.75 0.443273
Target:  5'- gGGCGCGGCGcucaggcgccccagGGCGGCgAGCACC-CCCGc -3'
miRNA:   3'- -UCGCGCUGC--------------UUGUUG-UCGUGGuGGGU- -5'
5464 3' -55.6 NC_001798.1 + 115781 0.75 0.464541
Target:  5'- uGGCGCGugGu-CAACGGCaACCugCCc -3'
miRNA:   3'- -UCGCGCugCuuGUUGUCG-UGGugGGu -5'
5464 3' -55.6 NC_001798.1 + 1941 0.75 0.473952
Target:  5'- -cCGCGugGAcaGCAGCAGCACgcccugcgCGCCCAg -3'
miRNA:   3'- ucGCGCugCU--UGUUGUCGUG--------GUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 150749 0.75 0.473952
Target:  5'- cGGCaCGACGGccGCGACGGCaggGCCGCCCc -3'
miRNA:   3'- -UCGcGCUGCU--UGUUGUCG---UGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 96442 0.75 0.473952
Target:  5'- uGGCGCGAgGGGgAGCGGCuccuggGCCACCUg -3'
miRNA:   3'- -UCGCGCUgCUUgUUGUCG------UGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 110624 0.74 0.483459
Target:  5'- gGGUGUGugGAcGCAGCGGCGuCCacGCCCAa -3'
miRNA:   3'- -UCGCGCugCU-UGUUGUCGU-GG--UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 24834 0.74 0.502739
Target:  5'- uGCGCGugGccGGCGGCAGCgagGCCGCCg- -3'
miRNA:   3'- uCGCGCugC--UUGUUGUCG---UGGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 97849 0.74 0.502739
Target:  5'- gGGCGCGggcACGGucaucgACAACcGCGCCGCCCc -3'
miRNA:   3'- -UCGCGC---UGCU------UGUUGuCGUGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.