miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 3' -55.6 NC_001798.1 + 81 0.71 0.695532
Target:  5'- cGGCG-GGCGGGCGGCAGgGCaGCCCc -3'
miRNA:   3'- -UCGCgCUGCUUGUUGUCgUGgUGGGu -5'
5464 3' -55.6 NC_001798.1 + 1293 0.67 0.889364
Target:  5'- gGGCGCGucgccguCGGGCucgAGCAgCGCCCGc -3'
miRNA:   3'- -UCGCGCu------GCUUGuugUCGUgGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 1389 0.73 0.572534
Target:  5'- cAGCGCcacguaGACGGGCcGCAGCGgCgCGCCCAg -3'
miRNA:   3'- -UCGCG------CUGCUUGuUGUCGU-G-GUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 1476 0.72 0.634072
Target:  5'- cGGCGCGcCGGGCGccAUGGCGUCGCCCGc -3'
miRNA:   3'- -UCGCGCuGCUUGU--UGUCGUGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 1544 0.73 0.541244
Target:  5'- cGGCGCGGCGGuacucgcgcggggACAugGGCACCAgCg- -3'
miRNA:   3'- -UCGCGCUGCU-------------UGUugUCGUGGUgGgu -5'
5464 3' -55.6 NC_001798.1 + 1859 0.66 0.924951
Target:  5'- cGGCGuUGACGAcgaugagGCGGCggucgcaGGCGCCGgCCAg -3'
miRNA:   3'- -UCGC-GCUGCU-------UGUUG-------UCGUGGUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 1941 0.75 0.473952
Target:  5'- -cCGCGugGAcaGCAGCAGCACgcccugcgCGCCCAg -3'
miRNA:   3'- ucGCGCugCU--UGUUGUCGUG--------GUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 2113 0.67 0.860305
Target:  5'- cGGCGCGGCccGCGGcCAGguCCucGCCCGg -3'
miRNA:   3'- -UCGCGCUGcuUGUU-GUCguGG--UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 2230 0.67 0.859534
Target:  5'- aGGCGCGcaGCGGgccgaagGCGGCGggcGCGCCGCCgGg -3'
miRNA:   3'- -UCGCGC--UGCU-------UGUUGU---CGUGGUGGgU- -5'
5464 3' -55.6 NC_001798.1 + 2270 0.66 0.902537
Target:  5'- gGGCGgGGCGGcGCAGC-GCGCgGCCa- -3'
miRNA:   3'- -UCGCgCUGCU-UGUUGuCGUGgUGGgu -5'
5464 3' -55.6 NC_001798.1 + 2308 0.68 0.844501
Target:  5'- cGCGCGGguCGAACAugAGgGCCggGCgCCAc -3'
miRNA:   3'- uCGCGCU--GCUUGUugUCgUGG--UG-GGU- -5'
5464 3' -55.6 NC_001798.1 + 2423 0.68 0.844501
Target:  5'- cGGCGUGugGcugggccccggcGGCuGGCGGCGCCAgCCGc -3'
miRNA:   3'- -UCGCGCugC------------UUG-UUGUCGUGGUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 2508 0.7 0.729623
Target:  5'- gGGCGCGGCGGccgcggcgGCGGCgucggcggggcggggGGCGCgGCCCc -3'
miRNA:   3'- -UCGCGCUGCU--------UGUUG---------------UCGUGgUGGGu -5'
5464 3' -55.6 NC_001798.1 + 2591 0.72 0.592951
Target:  5'- cGCGCGGCucuucuucgggGGGCGcGgGGCGCCGCCCGg -3'
miRNA:   3'- uCGCGCUG-----------CUUGU-UgUCGUGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 2687 0.71 0.692488
Target:  5'- gGGCGCGGCGAgcgagucggccgcgGCGACGGUGUCGgCCAg -3'
miRNA:   3'- -UCGCGCUGCU--------------UGUUGUCGUGGUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 2764 0.67 0.882431
Target:  5'- -cCGCGGCGGcgGCGGCGGCGgaGCUCAg -3'
miRNA:   3'- ucGCGCUGCU--UGUUGUCGUggUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 2793 0.76 0.419023
Target:  5'- aGGCGCGGgCuccGCGGCAGCGCCggGCCCAg -3'
miRNA:   3'- -UCGCGCU-Gcu-UGUUGUCGUGG--UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 2845 0.69 0.792652
Target:  5'- cGGCGCGcACGGcggccACGGCGGCcucgcuGCCGCCg- -3'
miRNA:   3'- -UCGCGC-UGCU-----UGUUGUCG------UGGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 2918 0.66 0.896067
Target:  5'- cAGCGCGucgcgcACGAACcGCAGCucGCgCAgCCAg -3'
miRNA:   3'- -UCGCGC------UGCUUGuUGUCG--UG-GUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 2977 0.67 0.860305
Target:  5'- cGUGCGGCGG--GGCGGC-CgGCCCGc -3'
miRNA:   3'- uCGCGCUGCUugUUGUCGuGgUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.