miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 5' -58.7 NC_001798.1 + 3345 0.74 0.355379
Target:  5'- cGCGGGcgUCgUCGcCGUCGUGGCGGu -3'
miRNA:   3'- aCGCCCaaAGgGGCaGUAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 4409 0.73 0.403509
Target:  5'- gGCGGGg--CgCCGgggGUCGCGGCGAc -3'
miRNA:   3'- aCGCCCaaaGgGGCag-UAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 98631 0.73 0.420443
Target:  5'- gGCGGcGUggCCgCGacCGUCGCGGCGAa -3'
miRNA:   3'- aCGCC-CAaaGGgGCa-GUAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 2998 0.72 0.455562
Target:  5'- cGCGGG---CCCCGggcgCGggggCGCGGCGGg -3'
miRNA:   3'- aCGCCCaaaGGGGCa---GUa---GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 91125 0.72 0.473705
Target:  5'- cGCGGGggcgUCCUCGUCcagcgaacgCGgGGCGAu -3'
miRNA:   3'- aCGCCCaa--AGGGGCAGua-------GCgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 104527 0.71 0.511028
Target:  5'- gGCGcGGUUga--CGUCGUCGCGGUGGg -3'
miRNA:   3'- aCGC-CCAAagggGCAGUAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 1255 0.71 0.539801
Target:  5'- gGCGGGcccgcgUCCgCGUCGUCGCGcagcaccaGCGGg -3'
miRNA:   3'- aCGCCCaa----AGGgGCAGUAGCGC--------CGCU- -5'
5464 5' -58.7 NC_001798.1 + 121409 0.71 0.553418
Target:  5'- gGUGGGggcgauccuagcCCCCGUCAUCcCGGCGc -3'
miRNA:   3'- aCGCCCaaa---------GGGGCAGUAGcGCCGCu -5'
5464 5' -58.7 NC_001798.1 + 116329 0.71 0.555373
Target:  5'- cGCGGGggggcacgagCCCGUCuaCGCGGCGGc -3'
miRNA:   3'- aCGCCCaaag------GGGCAGuaGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 31279 0.71 0.559286
Target:  5'- cUGgGGGcggCCCUGcCGUCGCGGCc- -3'
miRNA:   3'- -ACgCCCaaaGGGGCaGUAGCGCCGcu -5'
5464 5' -58.7 NC_001798.1 + 70293 0.7 0.569103
Target:  5'- gGCGGcGUUUCUgUUGUCGggCGCGGCGGu -3'
miRNA:   3'- aCGCC-CAAAGG-GGCAGUa-GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 53177 0.7 0.569103
Target:  5'- cGCGGGcgUCCCCGa----GCGGCGc -3'
miRNA:   3'- aCGCCCaaAGGGGCaguagCGCCGCu -5'
5464 5' -58.7 NC_001798.1 + 49769 0.7 0.569103
Target:  5'- gUGCGGGgagUUCCCGUgGagGCccGGCGAc -3'
miRNA:   3'- -ACGCCCaa-AGGGGCAgUagCG--CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 69451 0.7 0.578962
Target:  5'- cUGgGGGcccugUCCCCcaaaagcaccggGcCGUCGCGGCGAg -3'
miRNA:   3'- -ACgCCCaa---AGGGG------------CaGUAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 27260 0.7 0.608731
Target:  5'- cGCGGGaccgcagCCCCGUgGcgCGCGGgGGg -3'
miRNA:   3'- aCGCCCaaa----GGGGCAgUa-GCGCCgCU- -5'
5464 5' -58.7 NC_001798.1 + 2491 0.7 0.608731
Target:  5'- gGCGGGUcagCgCCG-CGgggCGCGGCGGc -3'
miRNA:   3'- aCGCCCAaa-GgGGCaGUa--GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 43033 0.7 0.618697
Target:  5'- cGCGGGg--CCCCGggcgCAaaUGCGGCGc -3'
miRNA:   3'- aCGCCCaaaGGGGCa---GUa-GCGCCGCu -5'
5464 5' -58.7 NC_001798.1 + 76883 0.7 0.618697
Target:  5'- cUGCGGGccUCCCUGcCcgCGgGGUGGa -3'
miRNA:   3'- -ACGCCCaaAGGGGCaGuaGCgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 150834 0.69 0.624681
Target:  5'- cGCGGGgcgccagggggCgCCgGUCggGUCGCGGCGGg -3'
miRNA:   3'- aCGCCCaaa--------G-GGgCAG--UAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 5594 0.69 0.628671
Target:  5'- gGCGaGGUcgCCCCGUUGgucCGCgGGCGGc -3'
miRNA:   3'- aCGC-CCAaaGGGGCAGUa--GCG-CCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.