miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 5' -58.7 NC_001798.1 + 1255 0.71 0.539801
Target:  5'- gGCGGGcccgcgUCCgCGUCGUCGCGcagcaccaGCGGg -3'
miRNA:   3'- aCGCCCaa----AGGgGCAGUAGCGC--------CGCU- -5'
5464 5' -58.7 NC_001798.1 + 2491 0.7 0.608731
Target:  5'- gGCGGGUcagCgCCG-CGgggCGCGGCGGc -3'
miRNA:   3'- aCGCCCAaa-GgGGCaGUa--GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 2962 0.67 0.783237
Target:  5'- gGCGGGg---CgCGUCGgcgUGCGGCGGg -3'
miRNA:   3'- aCGCCCaaagGgGCAGUa--GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 2998 0.72 0.455562
Target:  5'- cGCGGG---CCCCGggcgCGggggCGCGGCGGg -3'
miRNA:   3'- aCGCCCaaaGGGGCa---GUa---GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 3345 0.74 0.355379
Target:  5'- cGCGGGcgUCgUCGcCGUCGUGGCGGu -3'
miRNA:   3'- aCGCCCaaAGgGGCaGUAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 4155 0.67 0.765012
Target:  5'- cGCGGGcacccccgccUCCUCGUCGUcCGCGcCGAg -3'
miRNA:   3'- aCGCCCaa--------AGGGGCAGUA-GCGCcGCU- -5'
5464 5' -58.7 NC_001798.1 + 4409 0.73 0.403509
Target:  5'- gGCGGGg--CgCCGgggGUCGCGGCGAc -3'
miRNA:   3'- aCGCCCaaaGgGGCag-UAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 5594 0.69 0.628671
Target:  5'- gGCGaGGUcgCCCCGUUGgucCGCgGGCGGc -3'
miRNA:   3'- aCGC-CCAaaGGGGCAGUa--GCG-CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 7050 0.66 0.832131
Target:  5'- --gGGGUUUCCCCGgccCAcccccaaaccccggUUGgGGCGGg -3'
miRNA:   3'- acgCCCAAAGGGGCa--GU--------------AGCgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 11639 0.66 0.800946
Target:  5'- cGCGGGcgUCCCUGU-GUCcccgGgGGCGGg -3'
miRNA:   3'- aCGCCCaaAGGGGCAgUAG----CgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 15271 0.67 0.771445
Target:  5'- gGCGGug--CCCCGgguUCcgggcguggcggugGUCGCGGCGAc -3'
miRNA:   3'- aCGCCcaaaGGGGC---AG--------------UAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 22776 0.66 0.826401
Target:  5'- cGgGGGacgUCUCCGggc-CGCGGCGGa -3'
miRNA:   3'- aCgCCCaa-AGGGGCaguaGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 24138 0.66 0.79216
Target:  5'- cGCGGGccgugCCCCaccugggguacGcCAUgGCGGCGGg -3'
miRNA:   3'- aCGCCCaaa--GGGG-----------CaGUAgCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 25615 0.67 0.773273
Target:  5'- gGCGGGccccCCCCGgagugguccgccgagCGCGGCGGg -3'
miRNA:   3'- aCGCCCaaa-GGGGCagua-----------GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 27205 0.69 0.668521
Target:  5'- gGCGGGggaagcCCCCGgggCGgggCGCGGgGGa -3'
miRNA:   3'- aCGCCCaaa---GGGGCa--GUa--GCGCCgCU- -5'
5464 5' -58.7 NC_001798.1 + 27260 0.7 0.608731
Target:  5'- cGCGGGaccgcagCCCCGUgGcgCGCGGgGGg -3'
miRNA:   3'- aCGCCCaaa----GGGGCAgUa-GCGCCgCU- -5'
5464 5' -58.7 NC_001798.1 + 27527 0.68 0.707919
Target:  5'- cGCGGGaaggcagCCCCG-CGgcgCGCGGgGGg -3'
miRNA:   3'- aCGCCCaaa----GGGGCaGUa--GCGCCgCU- -5'
5464 5' -58.7 NC_001798.1 + 27719 0.67 0.774185
Target:  5'- gGCGGGagUCCCCGUCcugcCGCcGCc- -3'
miRNA:   3'- aCGCCCaaAGGGGCAGua--GCGcCGcu -5'
5464 5' -58.7 NC_001798.1 + 31279 0.71 0.559286
Target:  5'- cUGgGGGcggCCCUGcCGUCGCGGCc- -3'
miRNA:   3'- -ACgCCCaaaGGGGCaGUAGCGCCGcu -5'
5464 5' -58.7 NC_001798.1 + 32425 0.67 0.755728
Target:  5'- cGCGGGggUCUCgagCGUCGUGGCc- -3'
miRNA:   3'- aCGCCCaaAGGGgcaGUAGCGCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.