miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5465 3' -62.1 NC_001798.1 + 4059 0.83 0.071489
Target:  5'- gCGG-CGCUCCAGGCggCCCGCGGUcgccGCGGg -3'
miRNA:   3'- -GCCaGCGAGGUUCG--GGGCGCCA----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 153011 0.77 0.170306
Target:  5'- gCGGUCGCcggggcggagUCCGGGCCCgCGCGGcggcgcGCGGu -3'
miRNA:   3'- -GCCAGCG----------AGGUUCGGG-GCGCCa-----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 1412 0.76 0.200654
Target:  5'- gCGGcgCGC-CCAGGCCCCagcgcgcgcaggcGCGGUGCGa -3'
miRNA:   3'- -GCCa-GCGaGGUUCGGGG-------------CGCCACGCc -5'
5465 3' -62.1 NC_001798.1 + 79278 0.76 0.205906
Target:  5'- gCGGcCGCggaCCuGGCCCCGUGG-GCGGu -3'
miRNA:   3'- -GCCaGCGa--GGuUCGGGGCGCCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 94992 0.74 0.25928
Target:  5'- gCGGcCGC-CUggGCCCCGCaGG-GCGGc -3'
miRNA:   3'- -GCCaGCGaGGuuCGGGGCG-CCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 27516 0.74 0.27736
Target:  5'- gCGGgggCGC-CCGcgggaaggcAGCCCCGCGGcgcGCGGg -3'
miRNA:   3'- -GCCa--GCGaGGU---------UCGGGGCGCCa--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 27255 0.73 0.289963
Target:  5'- gCGGcCGCgggaCCGcAGCCCCGUGGcgcGCGGg -3'
miRNA:   3'- -GCCaGCGa---GGU-UCGGGGCGCCa--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 147208 0.73 0.303012
Target:  5'- gCGGUCcgGC-CCGGGCCCCcgGCGGagcGCGGg -3'
miRNA:   3'- -GCCAG--CGaGGUUCGGGG--CGCCa--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 78032 0.73 0.303012
Target:  5'- gGGUCGacgCCGAGCCCC-UGGcGCGGc -3'
miRNA:   3'- gCCAGCga-GGUUCGGGGcGCCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 88453 0.72 0.323423
Target:  5'- aGGUCGa-CCAgGGCCCUGgaGGUGCGGu -3'
miRNA:   3'- gCCAGCgaGGU-UCGGGGCg-CCACGCC- -5'
5465 3' -62.1 NC_001798.1 + 47834 0.72 0.337591
Target:  5'- cCGGccccgcgcgCGCUCCuccaccccccggGGGCCCCGUGGgcgccgGCGGg -3'
miRNA:   3'- -GCCa--------GCGAGG------------UUCGGGGCGCCa-----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 17240 0.72 0.359678
Target:  5'- gGGUCGCgCgGGGCCgagaacaaggaCGCGGUGUGGa -3'
miRNA:   3'- gCCAGCGaGgUUCGGg----------GCGCCACGCC- -5'
5465 3' -62.1 NC_001798.1 + 134648 0.72 0.359678
Target:  5'- aGGUCGg-CCugcGGCCCCGCGGacacccgcaGCGGg -3'
miRNA:   3'- gCCAGCgaGGu--UCGGGGCGCCa--------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 2193 0.71 0.367261
Target:  5'- uGG-CGCaUCCAGGCCgCCGCGcGgcgcaGCGGg -3'
miRNA:   3'- gCCaGCG-AGGUUCGG-GGCGC-Ca----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 37534 0.71 0.374953
Target:  5'- ---aCGCcCCAAGCCCCaggGUGGUGUGGc -3'
miRNA:   3'- gccaGCGaGGUUCGGGG---CGCCACGCC- -5'
5465 3' -62.1 NC_001798.1 + 27109 0.71 0.390662
Target:  5'- aGGUgGC-CCGAGCCCCcccGCaGGaGCGGg -3'
miRNA:   3'- gCCAgCGaGGUUCGGGG---CG-CCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 48360 0.71 0.398676
Target:  5'- gCGGcCGC-CCGGggccGCCCCGCGGgGCGu -3'
miRNA:   3'- -GCCaGCGaGGUU----CGGGGCGCCaCGCc -5'
5465 3' -62.1 NC_001798.1 + 23656 0.71 0.398676
Target:  5'- uGGagCGCcgCCGGGCCCgCGCGGcgGUGGc -3'
miRNA:   3'- gCCa-GCGa-GGUUCGGG-GCGCCa-CGCC- -5'
5465 3' -62.1 NC_001798.1 + 43115 0.71 0.398676
Target:  5'- aCGGUCGCuUCCGGcgggcgcgcGUCCCGCGucacGCGGg -3'
miRNA:   3'- -GCCAGCG-AGGUU---------CGGGGCGCca--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 138152 0.71 0.406794
Target:  5'- gCGGUCGCgcccCCGGGUCCUGgGG-GCGc -3'
miRNA:   3'- -GCCAGCGa---GGUUCGGGGCgCCaCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.