miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5465 3' -62.1 NC_001798.1 + 637 0.68 0.5302
Target:  5'- aGGUCagaGCcCCAGaccCCCCGCGGgcGCGGg -3'
miRNA:   3'- gCCAG---CGaGGUUc--GGGGCGCCa-CGCC- -5'
5465 3' -62.1 NC_001798.1 + 1148 0.66 0.674392
Target:  5'- gCGG-CGUggCC-AGCCCCGCG--GCGGu -3'
miRNA:   3'- -GCCaGCGa-GGuUCGGGGCGCcaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 1412 0.76 0.200654
Target:  5'- gCGGcgCGC-CCAGGCCCCagcgcgcgcaggcGCGGUGCGa -3'
miRNA:   3'- -GCCa-GCGaGGUUCGGGG-------------CGCCACGCc -5'
5465 3' -62.1 NC_001798.1 + 2193 0.71 0.367261
Target:  5'- uGG-CGCaUCCAGGCCgCCGCGcGgcgcaGCGGg -3'
miRNA:   3'- gCCaGCG-AGGUUCGG-GGCGC-Ca----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 2422 0.69 0.484242
Target:  5'- cCGG-CGUguggCUggGCCCCgGCGGcugGCGGc -3'
miRNA:   3'- -GCCaGCGa---GGuuCGGGG-CGCCa--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 3084 0.68 0.558532
Target:  5'- ---gCGcCUCCAGGaUCCCGCGGcagGCGGc -3'
miRNA:   3'- gccaGC-GAGGUUC-GGGGCGCCa--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 4059 0.83 0.071489
Target:  5'- gCGG-CGCUCCAGGCggCCCGCGGUcgccGCGGg -3'
miRNA:   3'- -GCCaGCGAGGUUCG--GGGCGCCA----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 4422 0.7 0.43176
Target:  5'- gGGUCGCggcgacaggcuggCCAugggguccggguacGCCCCGCGGaccGCGGa -3'
miRNA:   3'- gCCAGCGa------------GGUu-------------CGGGGCGCCa--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 5598 0.71 0.406794
Target:  5'- aGGUCGCcCCGuuGgUCCGCGG-GCGGc -3'
miRNA:   3'- gCCAGCGaGGUu-CgGGGCGCCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 15429 0.69 0.475276
Target:  5'- gGGUUGUUUgGGGCCCCggagucGUGGgGCGGg -3'
miRNA:   3'- gCCAGCGAGgUUCGGGG------CGCCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 17240 0.72 0.359678
Target:  5'- gGGUCGCgCgGGGCCgagaacaaggaCGCGGUGUGGa -3'
miRNA:   3'- gCCAGCGaGgUUCGGg----------GCGCCACGCC- -5'
5465 3' -62.1 NC_001798.1 + 21712 0.66 0.684011
Target:  5'- cCGGUcuccgcCGCgcagCCGguguGCCCC-UGGUGCGGc -3'
miRNA:   3'- -GCCA------GCGa---GGUu---CGGGGcGCCACGCC- -5'
5465 3' -62.1 NC_001798.1 + 22779 0.66 0.693591
Target:  5'- gGGaCGuCUCCGGGCCgCgGCGGagacgaccgGCGGc -3'
miRNA:   3'- gCCaGC-GAGGUUCGG-GgCGCCa--------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 23556 0.68 0.53959
Target:  5'- gCGGgggUGC-CCGcgagGGCCCCGgGG-GCGGc -3'
miRNA:   3'- -GCCa--GCGaGGU----UCGGGGCgCCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 23656 0.71 0.398676
Target:  5'- uGGagCGCcgCCGGGCCCgCGCGGcgGUGGc -3'
miRNA:   3'- gCCa-GCGa-GGUUCGGG-GCGCCa-CGCC- -5'
5465 3' -62.1 NC_001798.1 + 24026 0.69 0.511606
Target:  5'- gGGUgGCUCCAGaaCCCGCGcGUGgcgccCGGg -3'
miRNA:   3'- gCCAgCGAGGUUcgGGGCGC-CAC-----GCC- -5'
5465 3' -62.1 NC_001798.1 + 24712 0.66 0.645378
Target:  5'- ---gCGC-CCGGGgCCCGCGGgcGCGGc -3'
miRNA:   3'- gccaGCGaGGUUCgGGGCGCCa-CGCC- -5'
5465 3' -62.1 NC_001798.1 + 24888 0.66 0.703126
Target:  5'- uGGUCGCcggggCCcuGGGCCCgGCGcugccGCGGa -3'
miRNA:   3'- gCCAGCGa----GG--UUCGGGgCGCca---CGCC- -5'
5465 3' -62.1 NC_001798.1 + 25132 0.67 0.606591
Target:  5'- gCGGaCGCcCCccGCCCCGCGGccgccccucccGCGGg -3'
miRNA:   3'- -GCCaGCGaGGuuCGGGGCGCCa----------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 26187 0.66 0.664742
Target:  5'- cCGG-CGCUggacggCCGGGCCgCCGCcucgGGcGCGGg -3'
miRNA:   3'- -GCCaGCGA------GGUUCGG-GGCG----CCaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.