miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5466 3' -61 NC_001798.1 + 21425 0.66 0.733143
Target:  5'- cCCGGCccGUCCcccCGGCCcguCCCcCCGGCc -3'
miRNA:   3'- -GGCUGaaCAGGc--GCCGG---GGGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 21660 0.66 0.723744
Target:  5'- gCCGGCgucucUGUCUcgcuGUGGCCCCCuuCgCGAUn -3'
miRNA:   3'- -GGCUGa----ACAGG----CGCCGGGGGu-G-GCUG- -5'
5466 3' -61 NC_001798.1 + 21697 0.67 0.656382
Target:  5'- gCCGccGCUgccGUCC-CGGUCUCCGCCGcGCa -3'
miRNA:   3'- -GGC--UGAa--CAGGcGCCGGGGGUGGC-UG- -5'
5466 3' -61 NC_001798.1 + 23297 0.7 0.493475
Target:  5'- gCGACc---CC-CGGCgCCCCGCCGACa -3'
miRNA:   3'- gGCUGaacaGGcGCCG-GGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 23338 0.67 0.685509
Target:  5'- aCCGcCgccggCGCGcCCCCCGCCGGCg -3'
miRNA:   3'- -GGCuGaacagGCGCcGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 23482 0.7 0.511921
Target:  5'- aCGACgccGcCCGC-GCCCCCGCCaGCg -3'
miRNA:   3'- gGCUGaa-CaGGCGcCGGGGGUGGcUG- -5'
5466 3' -61 NC_001798.1 + 23725 0.67 0.69226
Target:  5'- cCCGGCggGUCgagcuggacgccgaCGCGGCCUCCGgCGcCu -3'
miRNA:   3'- -GGCUGaaCAG--------------GCGCCGGGGGUgGCuG- -5'
5466 3' -61 NC_001798.1 + 24431 0.75 0.252343
Target:  5'- gCCGACgaG-CgCGCGGUgCCCGCCGGCu -3'
miRNA:   3'- -GGCUGaaCaG-GCGCCGgGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 25188 0.7 0.493475
Target:  5'- gCCGACgccgccgCCGCGGCCgCCGCgccccgCGGCg -3'
miRNA:   3'- -GGCUGaaca---GGCGCCGGgGGUG------GCUG- -5'
5466 3' -61 NC_001798.1 + 25646 0.68 0.627096
Target:  5'- gCGGCgggcUGUCCugccugcugGCGGCCCUgggcaACCGGCu -3'
miRNA:   3'- gGCUGa---ACAGG---------CGCCGGGGg----UGGCUG- -5'
5466 3' -61 NC_001798.1 + 25864 0.68 0.588125
Target:  5'- gCCGuGCgcg-CCGCGGaCUggCCCGCCGACg -3'
miRNA:   3'- -GGC-UGaacaGGCGCC-GG--GGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 26415 0.67 0.685509
Target:  5'- cCCGACggcgaCGC-GCCCCCGCUGGu -3'
miRNA:   3'- -GGCUGaacagGCGcCGGGGGUGGCUg -5'
5466 3' -61 NC_001798.1 + 27914 0.68 0.607577
Target:  5'- cCCGcCg---CCGgGGUCCCCGCCGcCg -3'
miRNA:   3'- -GGCuGaacaGGCgCCGGGGGUGGCuG- -5'
5466 3' -61 NC_001798.1 + 28855 0.71 0.448777
Target:  5'- aCCGGCgaGg--GCGGCCUCgGCCGGCg -3'
miRNA:   3'- -GGCUGaaCaggCGCCGGGGgUGGCUG- -5'
5466 3' -61 NC_001798.1 + 29818 0.68 0.588125
Target:  5'- gCGGCcg--CCGCGGCagaCCC-CCGGCa -3'
miRNA:   3'- gGCUGaacaGGCGCCGg--GGGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 31572 0.71 0.440106
Target:  5'- -gGGCgcg-CCGCGcGCCCCCGCgCGGCc -3'
miRNA:   3'- ggCUGaacaGGCGC-CGGGGGUG-GCUG- -5'
5466 3' -61 NC_001798.1 + 32056 0.73 0.336813
Target:  5'- cCCGGC--GUCCGCGggcgccgcGCCCCCGUCGGCg -3'
miRNA:   3'- -GGCUGaaCAGGCGC--------CGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 32565 0.71 0.440106
Target:  5'- aCCuGCUgcgGgCCGCGGCCCCCGCgUGGa -3'
miRNA:   3'- -GGcUGAa--CaGGCGCCGGGGGUG-GCUg -5'
5466 3' -61 NC_001798.1 + 32846 0.66 0.75536
Target:  5'- cUCGGCUUGcugcccgaaggaagCCGC--CCCCCACCGGa -3'
miRNA:   3'- -GGCUGAACa-------------GGCGccGGGGGUGGCUg -5'
5466 3' -61 NC_001798.1 + 34796 0.68 0.631003
Target:  5'- gCCGGCgcgGcCCGgGGCCCcggggcccccgcgcuCCGCCGGg -3'
miRNA:   3'- -GGCUGaa-CaGGCgCCGGG---------------GGUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.