miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5466 3' -61 NC_001798.1 + 210 0.71 0.448777
Target:  5'- gCGGCUUuuuucCCGCGcccGCCCCCGCgCGGCa -3'
miRNA:   3'- gGCUGAAca---GGCGC---CGGGGGUG-GCUG- -5'
5466 3' -61 NC_001798.1 + 1144 0.66 0.742462
Target:  5'- cUCGGCggcgUGgccagccCCGCGGCgguCCCCACCa-- -3'
miRNA:   3'- -GGCUGa---ACa------GGCGCCG---GGGGUGGcug -5'
5466 3' -61 NC_001798.1 + 1201 0.69 0.549616
Target:  5'- gCGGCcagcaccGUCCccgcGCGGCCCgCgGCCGACg -3'
miRNA:   3'- gGCUGaa-----CAGG----CGCCGGG-GgUGGCUG- -5'
5466 3' -61 NC_001798.1 + 1663 0.66 0.704738
Target:  5'- -aGGCgcgcGUgCGCGGCCUCCACgCGcGCg -3'
miRNA:   3'- ggCUGaa--CAgGCGCCGGGGGUG-GC-UG- -5'
5466 3' -61 NC_001798.1 + 2111 0.7 0.484366
Target:  5'- cCCGGCgcgGcCCGCGGCcagguCCUCGCCcGGCa -3'
miRNA:   3'- -GGCUGaa-CaGGCGCCG-----GGGGUGG-CUG- -5'
5466 3' -61 NC_001798.1 + 2524 0.69 0.546756
Target:  5'- gCGGCggcGUCggcggggcggggggCGCGGCCCCCGCgGGa -3'
miRNA:   3'- gGCUGaa-CAG--------------GCGCCGGGGGUGgCUg -5'
5466 3' -61 NC_001798.1 + 3166 0.72 0.395811
Target:  5'- gCCGGCgccGUCgucgucgucgucguCGuCGGCCCCgGCCGGCg -3'
miRNA:   3'- -GGCUGaa-CAG--------------GC-GCCGGGGgUGGCUG- -5'
5466 3' -61 NC_001798.1 + 3904 0.7 0.484366
Target:  5'- gCCGGCcccgGgCCaCGGCuCCCCGCUGACg -3'
miRNA:   3'- -GGCUGaa--CaGGcGCCG-GGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 4477 0.66 0.733143
Target:  5'- gUCGuCUccgGUCCGCGGa-CCCAgCGGCc -3'
miRNA:   3'- -GGCuGAa--CAGGCGCCggGGGUgGCUG- -5'
5466 3' -61 NC_001798.1 + 4708 0.7 0.466396
Target:  5'- aCGACgccGUCCGCGGCaggCUCGUCGACg -3'
miRNA:   3'- gGCUGaa-CAGGCGCCGg--GGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 5345 0.66 0.751694
Target:  5'- aCCGcaUUaUgCGCGGCCCCgCcCCGACg -3'
miRNA:   3'- -GGCugAAcAgGCGCCGGGG-GuGGCUG- -5'
5466 3' -61 NC_001798.1 + 5549 0.75 0.276314
Target:  5'- gCCGGCc---CCGCgcucccguuGGCCCCCGCCGGCc -3'
miRNA:   3'- -GGCUGaacaGGCG---------CCGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 17930 0.72 0.374378
Target:  5'- uCCGGggUGaaccCCGUGGCCCCCACCu-- -3'
miRNA:   3'- -GGCUgaACa---GGCGCCGGGGGUGGcug -5'
5466 3' -61 NC_001798.1 + 18605 0.68 0.588125
Target:  5'- cCCGg---GUCCGCGcGCCguCCCGCCGuGCa -3'
miRNA:   3'- -GGCugaaCAGGCGC-CGG--GGGUGGC-UG- -5'
5466 3' -61 NC_001798.1 + 18736 0.66 0.751694
Target:  5'- aCGcCcUG-CCGCGGaCUUCCGCUGACg -3'
miRNA:   3'- gGCuGaACaGGCGCC-GGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 19011 0.74 0.308792
Target:  5'- uUCGGCUccUGcaucaagagcgCCcCGGCCCCCACCGGCu -3'
miRNA:   3'- -GGCUGA--ACa----------GGcGCCGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 19152 0.69 0.568789
Target:  5'- aCGACgcgUGggugggggaaCCGUGGCCCCUGcCCGAUc -3'
miRNA:   3'- gGCUGa--ACa---------GGCGCCGGGGGU-GGCUG- -5'
5466 3' -61 NC_001798.1 + 20275 0.68 0.617331
Target:  5'- gCGGCcccacGUgCGCGGCCCCaggcggguCCGGCa -3'
miRNA:   3'- gGCUGaa---CAgGCGCCGGGGgu------GGCUG- -5'
5466 3' -61 NC_001798.1 + 21347 0.66 0.733143
Target:  5'- cCCGGCccGUCCcccCGGCCcguCCCcCCGGCc -3'
miRNA:   3'- -GGCUGaaCAGGc--GCCGG---GGGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 21386 0.66 0.733143
Target:  5'- cCCGGCccGUCCcccCGGCCcguCCCcCCGGCc -3'
miRNA:   3'- -GGCUGaaCAGGc--GCCGG---GGGuGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.