miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5466 3' -61 NC_001798.1 + 121691 0.79 0.146065
Target:  5'- gCGGCUgggGgCCGCGGCUCCCGCCGcCg -3'
miRNA:   3'- gGCUGAa--CaGGCGCCGGGGGUGGCuG- -5'
5466 3' -61 NC_001798.1 + 110897 0.77 0.186102
Target:  5'- cCCGGCg-GUUCGCGugcggccagccGCCCCCGCCGGCc -3'
miRNA:   3'- -GGCUGaaCAGGCGC-----------CGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 109420 0.77 0.204668
Target:  5'- uCCGugUUGgacCCgGCGGCCCgCCugCGGCu -3'
miRNA:   3'- -GGCugAACa--GG-CGCCGGG-GGugGCUG- -5'
5466 3' -61 NC_001798.1 + 145420 0.76 0.224816
Target:  5'- cCCGGCcg--CCGCGcGCCCCCGcCCGGCc -3'
miRNA:   3'- -GGCUGaacaGGCGC-CGGGGGU-GGCUG- -5'
5466 3' -61 NC_001798.1 + 145462 0.76 0.224816
Target:  5'- cCCGGCcg--CCGCGcGCCCCCGcCCGGCc -3'
miRNA:   3'- -GGCUGaacaGGCGC-CGGGGGU-GGCUG- -5'
5466 3' -61 NC_001798.1 + 145504 0.76 0.224816
Target:  5'- cCCGGCcg--CCGCGcGCCCCCGcCCGGCc -3'
miRNA:   3'- -GGCUGaacaGGCGC-CGGGGGU-GGCUG- -5'
5466 3' -61 NC_001798.1 + 102304 0.76 0.241013
Target:  5'- uCCGGCUgcuccaccucgUGUCgGCGGCgCUUCGCCGACc -3'
miRNA:   3'- -GGCUGA-----------ACAGgCGCCG-GGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 76919 0.75 0.246624
Target:  5'- gCCGAUgccGUCCGgGGCCCCCccCCGGa -3'
miRNA:   3'- -GGCUGaa-CAGGCgCCGGGGGu-GGCUg -5'
5466 3' -61 NC_001798.1 + 24431 0.75 0.252343
Target:  5'- gCCGACgaG-CgCGCGGUgCCCGCCGGCu -3'
miRNA:   3'- -GGCUGaaCaG-GCGCCGgGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 145894 0.75 0.252343
Target:  5'- cCCGACcg--CCGCcGCgCCCCACCGGCg -3'
miRNA:   3'- -GGCUGaacaGGCGcCG-GGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 87705 0.75 0.264108
Target:  5'- uUCGACgaguuuccUCCGCcguagcgccGGCCCCCGCCGGCc -3'
miRNA:   3'- -GGCUGaac-----AGGCG---------CCGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 152620 0.75 0.270156
Target:  5'- gCCGACgcagaugggaGUCCcccCGGCgCCCCGCCGGCg -3'
miRNA:   3'- -GGCUGaa--------CAGGc--GCCG-GGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 111431 0.75 0.270156
Target:  5'- cCCGAgaaacGcCCGCGgaGCCCCCACCGACc -3'
miRNA:   3'- -GGCUgaa--CaGGCGC--CGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 149974 0.75 0.276314
Target:  5'- gCCGACggGggCGCGGCgCCCGCgGACg -3'
miRNA:   3'- -GGCUGaaCagGCGCCGgGGGUGgCUG- -5'
5466 3' -61 NC_001798.1 + 138734 0.75 0.276314
Target:  5'- gCCGGCgcgcUCCGCGGCCCCgG-CGACc -3'
miRNA:   3'- -GGCUGaac-AGGCGCCGGGGgUgGCUG- -5'
5466 3' -61 NC_001798.1 + 5549 0.75 0.276314
Target:  5'- gCCGGCc---CCGCgcucccguuGGCCCCCGCCGGCc -3'
miRNA:   3'- -GGCUGaacaGGCG---------CCGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 93243 0.74 0.289612
Target:  5'- cCCuGCUUGagggccaggaaacgcCCGCGGCCCgCGCCGGCg -3'
miRNA:   3'- -GGcUGAACa--------------GGCGCCGGGgGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 153668 0.74 0.291552
Target:  5'- gCGGCgcGUCCGCgggcggggacgcgggGGCCgCCGCCGGCg -3'
miRNA:   3'- gGCUGaaCAGGCG---------------CCGGgGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 110660 0.74 0.299414
Target:  5'- aCCGACUcccuccgUGUCCGCGGUCUguuuguuauuguguCCGCCGuGCg -3'
miRNA:   3'- -GGCUGA-------ACAGGCGCCGGG--------------GGUGGC-UG- -5'
5466 3' -61 NC_001798.1 + 114819 0.74 0.30207
Target:  5'- gCGACgcagccGUCCGUGGCcgugCCCCGCCuGACg -3'
miRNA:   3'- gGCUGaa----CAGGCGCCG----GGGGUGG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.