miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5467 5' -58.8 NC_001798.1 + 3865 0.82 0.116107
Target:  5'- gCCCAgcccGCCGUACAGCacgcGCCCCGggGGCGGGg -3'
miRNA:   3'- -GGGU----UGGCGUGUCG----UGGGGC--UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 145893 0.81 0.138539
Target:  5'- cCCCGACCGcCGCcGCGCCCCaccGGCGGGa -3'
miRNA:   3'- -GGGUUGGC-GUGuCGUGGGGc--UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 72842 0.8 0.160863
Target:  5'- gCC-GCaCGCGCGGCacggGCCCCGAGCGGGu -3'
miRNA:   3'- gGGuUG-GCGUGUCG----UGGGGCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 87300 0.8 0.173202
Target:  5'- gCCGACCGcCACAGCACCCCccucCAGGa -3'
miRNA:   3'- gGGUUGGC-GUGUCGUGGGGcuc-GUCC- -5'
5467 5' -58.8 NC_001798.1 + 2879 0.79 0.190963
Target:  5'- gCCGGCCacGCGCAGguCCCCGcGCAGGc -3'
miRNA:   3'- gGGUUGG--CGUGUCguGGGGCuCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 89900 0.78 0.220591
Target:  5'- cCCCGGCCGUuCAuGCGCCCguacccguCGAGCGGGa -3'
miRNA:   3'- -GGGUUGGCGuGU-CGUGGG--------GCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 31200 0.78 0.225895
Target:  5'- aCCCGACCgGCGCccccuGGCGCCCCgcgGAGCAGc -3'
miRNA:   3'- -GGGUUGG-CGUG-----UCGUGGGG---CUCGUCc -5'
5467 5' -58.8 NC_001798.1 + 153658 0.78 0.231306
Target:  5'- aCCUucCCGCGCGGCGCguCCgCGGGCGGGg -3'
miRNA:   3'- -GGGuuGGCGUGUCGUG--GG-GCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 111552 0.77 0.262436
Target:  5'- gCCCGgucGCCGgcguagaacacccacCACAGCuCCCUGAGCGGGg -3'
miRNA:   3'- -GGGU---UGGC---------------GUGUCGuGGGGCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 27991 0.76 0.297557
Target:  5'- cUCCAGCCGUGCcGCGCCCCGGcgcgcucccaaccGCAGa -3'
miRNA:   3'- -GGGUUGGCGUGuCGUGGGGCU-------------CGUCc -5'
5467 5' -58.8 NC_001798.1 + 31120 0.76 0.297557
Target:  5'- uCCCGcCCGCcccccgaAgAGCGCCCCGGcGCGGGg -3'
miRNA:   3'- -GGGUuGGCG-------UgUCGUGGGGCU-CGUCC- -5'
5467 5' -58.8 NC_001798.1 + 14216 0.76 0.298228
Target:  5'- aCCCAGgCGaCGCAGgACCUCGAGUAGa -3'
miRNA:   3'- -GGGUUgGC-GUGUCgUGGGGCUCGUCc -5'
5467 5' -58.8 NC_001798.1 + 56901 0.76 0.304321
Target:  5'- aCCAGacgaacuCCGCGCGGUugCCCGGGUAGu -3'
miRNA:   3'- gGGUU-------GGCGUGUCGugGGGCUCGUCc -5'
5467 5' -58.8 NC_001798.1 + 152499 0.76 0.305004
Target:  5'- cCCCAauaGCCGC---GCGCCCCG-GCGGGg -3'
miRNA:   3'- -GGGU---UGGCGuguCGUGGGGCuCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 131325 0.76 0.305004
Target:  5'- aCCCAccacGCCGC-CcGCGCCCCGGGCGc- -3'
miRNA:   3'- -GGGU----UGGCGuGuCGUGGGGCUCGUcc -5'
5467 5' -58.8 NC_001798.1 + 14082 0.76 0.305004
Target:  5'- aCCGACCGCuccauagcuGCuGUACCCCGGGCAc- -3'
miRNA:   3'- gGGUUGGCG---------UGuCGUGGGGCUCGUcc -5'
5467 5' -58.8 NC_001798.1 + 88346 0.76 0.311898
Target:  5'- cCCCGAaCGCcuGCAGUcCCUCGGGCAGGg -3'
miRNA:   3'- -GGGUUgGCG--UGUCGuGGGGCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 32886 0.75 0.318909
Target:  5'- aCCGGCCGa--GGCGCCUCGggGGCAGGg -3'
miRNA:   3'- gGGUUGGCgugUCGUGGGGC--UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 92534 0.75 0.318909
Target:  5'- cCCCAACCuGaCGCGGCuCUgCGAGCGGGc -3'
miRNA:   3'- -GGGUUGG-C-GUGUCGuGGgGCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 18421 0.75 0.318909
Target:  5'- gCCAACCa-ACgAGCACCCCGAGCGacGGg -3'
miRNA:   3'- gGGUUGGcgUG-UCGUGGGGCUCGU--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.