miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5467 5' -58.8 NC_001798.1 + 169 0.69 0.647974
Target:  5'- cCCCGcgcGCCGCGgGGCugCCUucccGCGGGc -3'
miRNA:   3'- -GGGU---UGGCGUgUCGugGGGcu--CGUCC- -5'
5467 5' -58.8 NC_001798.1 + 202 0.7 0.622127
Target:  5'- gCCC--CCGCGCGGCuuuuuucccgcgcccGCCCCcgcgcGGCAGGa -3'
miRNA:   3'- -GGGuuGGCGUGUCG---------------UGGGGc----UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 474 0.66 0.808527
Target:  5'- cCCCGcgGCCGC-CucccccGCGCCCCGcccCGGGg -3'
miRNA:   3'- -GGGU--UGGCGuGu-----CGUGGGGCuc-GUCC- -5'
5467 5' -58.8 NC_001798.1 + 519 0.68 0.716773
Target:  5'- cCCCuccccCCGCGCccGCgGCCCCGAGCu-- -3'
miRNA:   3'- -GGGuu---GGCGUGu-CG-UGGGGCUCGucc -5'
5467 5' -58.8 NC_001798.1 + 1194 0.68 0.716773
Target:  5'- gCCC-GCCGCGgcCAGCAccguCCCCGcGCGGc -3'
miRNA:   3'- -GGGuUGGCGU--GUCGU----GGGGCuCGUCc -5'
5467 5' -58.8 NC_001798.1 + 1285 0.66 0.8245
Target:  5'- aCCAgcgggggcgcgucGCCGUcgggcucgaGCAGCGCCCgCGcGCAGa -3'
miRNA:   3'- gGGU-------------UGGCG---------UGUCGUGGG-GCuCGUCc -5'
5467 5' -58.8 NC_001798.1 + 1340 0.68 0.726395
Target:  5'- gCCgCGGcCCGCGCAGCuCCgCCGGGCc-- -3'
miRNA:   3'- -GG-GUU-GGCGUGUCGuGG-GGCUCGucc -5'
5467 5' -58.8 NC_001798.1 + 1426 0.7 0.615171
Target:  5'- cCCCAGCgCGCGCAggcgcggugcgaguGCGCCUCGuccucGCAGa -3'
miRNA:   3'- -GGGUUG-GCGUGU--------------CGUGGGGCu----CGUCc -5'
5467 5' -58.8 NC_001798.1 + 1519 0.75 0.340648
Target:  5'- gCCCGGCCGUcCAGCGCCggGAGCAcGGc -3'
miRNA:   3'- -GGGUUGGCGuGUCGUGGggCUCGU-CC- -5'
5467 5' -58.8 NC_001798.1 + 1753 0.68 0.697334
Target:  5'- gCCGGCCagcGCACGGCGCaCUGcacGGCGGGc -3'
miRNA:   3'- gGGUUGG---CGUGUCGUGgGGC---UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 2071 0.7 0.598309
Target:  5'- gCCC-GCCGCGCucGGCggaccACUCCGGGgGGGg -3'
miRNA:   3'- -GGGuUGGCGUG--UCG-----UGGGGCUCgUCC- -5'
5467 5' -58.8 NC_001798.1 + 2199 0.72 0.464592
Target:  5'- aUCCAggccGCCGCGCGGCGCagcgggCCCGAggcgcgcaGCGGGc -3'
miRNA:   3'- -GGGU----UGGCGUGUCGUG------GGGCU--------CGUCC- -5'
5467 5' -58.8 NC_001798.1 + 2438 0.71 0.54922
Target:  5'- cCCCGGCgGCugGCGGCGCCagCCGcccuGCGGGu -3'
miRNA:   3'- -GGGUUGgCG--UGUCGUGG--GGCu---CGUCC- -5'
5467 5' -58.8 NC_001798.1 + 2488 0.67 0.76403
Target:  5'- gCCGGCgGguCAGCGCCgCgGGGCGcGGc -3'
miRNA:   3'- gGGUUGgCguGUCGUGG-GgCUCGU-CC- -5'
5467 5' -58.8 NC_001798.1 + 2620 0.71 0.54922
Target:  5'- ---cGCCGCccgGCGGCGCCCUggccgGGGCGGGg -3'
miRNA:   3'- ggguUGGCG---UGUCGUGGGG-----CUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 2879 0.79 0.190963
Target:  5'- gCCGGCCacGCGCAGguCCCCGcGCAGGc -3'
miRNA:   3'- gGGUUGG--CGUGUCguGGGGCuCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 2991 0.73 0.429195
Target:  5'- gCCGGCC-CGCGG-GCCCCGGGCGcGGg -3'
miRNA:   3'- gGGUUGGcGUGUCgUGGGGCUCGU-CC- -5'
5467 5' -58.8 NC_001798.1 + 3073 0.69 0.638035
Target:  5'- gCCCu-CCGC-CAGCGCcuccaggauCCCGcGGCAGGc -3'
miRNA:   3'- -GGGuuGGCGuGUCGUG---------GGGC-UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 3198 0.69 0.627098
Target:  5'- cCCCGGCCggcgcggaggcggGCGCggcgcucaGGCGCCCCaGGGCGGc -3'
miRNA:   3'- -GGGUUGG-------------CGUG--------UCGUGGGG-CUCGUCc -5'
5467 5' -58.8 NC_001798.1 + 3533 0.7 0.602271
Target:  5'- cCCCAGCCGaaGCGGCccgccgccauggcguACCCCaGGUGGGg -3'
miRNA:   3'- -GGGUUGGCg-UGUCG---------------UGGGGcUCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.