miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5468 3' -58.8 NC_001798.1 + 117772 0.67 0.755265
Target:  5'- -cGGCCacgGCCaACCCGu--GGGCGuCGCa -3'
miRNA:   3'- caCUGGg--UGG-UGGGCuuuCCCGC-GUG- -5'
5468 3' -58.8 NC_001798.1 + 27477 0.67 0.755265
Target:  5'- -cGuCCUGCCGCgCGggGgcGGGCGCGg -3'
miRNA:   3'- caCuGGGUGGUGgGCuuU--CCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 45080 0.67 0.755265
Target:  5'- --cACCCGgCGCCuCGuGAAGGcGCGCGCc -3'
miRNA:   3'- cacUGGGUgGUGG-GC-UUUCC-CGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 26462 0.67 0.745759
Target:  5'- -gGGCCCGCC-CCCGcAGAuacgcuGGGCGUcgGCc -3'
miRNA:   3'- caCUGGGUGGuGGGC-UUU------CCCGCG--UG- -5'
5468 3' -58.8 NC_001798.1 + 27110 0.67 0.745759
Target:  5'- gGUGGCCCgaGCCcCCCcgcaggagcGGGAGGGaagGCACg -3'
miRNA:   3'- -CACUGGG--UGGuGGG---------CUUUCCCg--CGUG- -5'
5468 3' -58.8 NC_001798.1 + 72139 0.67 0.745759
Target:  5'- -cGaACCgGCCACCCGGGccGGCGUc- -3'
miRNA:   3'- caC-UGGgUGGUGGGCUUucCCGCGug -5'
5468 3' -58.8 NC_001798.1 + 31671 0.67 0.745759
Target:  5'- -gGGCCCgcGCCGCCCGccgugccGGuGGaCGCGCa -3'
miRNA:   3'- caCUGGG--UGGUGGGCuu-----UC-CC-GCGUG- -5'
5468 3' -58.8 NC_001798.1 + 121065 0.67 0.745759
Target:  5'- cGUGcGCCCGCgGgcCCCGAGGacGCGCACa -3'
miRNA:   3'- -CAC-UGGGUGgU--GGGCUUUccCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 37150 0.67 0.744803
Target:  5'- cGUGGCCgcucgcgccgCGCCGCCUGgcGGgccgcucGGCGCGCc -3'
miRNA:   3'- -CACUGG----------GUGGUGGGCuuUC-------CCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 5743 0.67 0.742888
Target:  5'- -gGGCCCGcgucaucccgcgcuCCGCCCcAAAGGGgGCGg -3'
miRNA:   3'- caCUGGGU--------------GGUGGGcUUUCCCgCGUg -5'
5468 3' -58.8 NC_001798.1 + 16389 0.67 0.736156
Target:  5'- -aGGCCCGCCGCCCu---GGuacGUGUACg -3'
miRNA:   3'- caCUGGGUGGUGGGcuuuCC---CGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 22321 0.67 0.736156
Target:  5'- -cGGgCCGCCGCCaCGGAcGcGGaCGCGCg -3'
miRNA:   3'- caCUgGGUGGUGG-GCUUuC-CC-GCGUG- -5'
5468 3' -58.8 NC_001798.1 + 33367 0.67 0.736156
Target:  5'- cUGGCCgGCCAgacCCUGggGGuGGUGgGCa -3'
miRNA:   3'- cACUGGgUGGU---GGGCuuUC-CCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 58328 0.67 0.736156
Target:  5'- -aGGCCCGCCGccgcguggccCCCGAcaaacaccuGGGGC-CACa -3'
miRNA:   3'- caCUGGGUGGU----------GGGCUu--------UCCCGcGUG- -5'
5468 3' -58.8 NC_001798.1 + 80637 0.67 0.736156
Target:  5'- -cGACCCACCGCaCCcccgccGCGCGCg -3'
miRNA:   3'- caCUGGGUGGUG-GGcuuuccCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 139277 0.67 0.736156
Target:  5'- --cACCCAgCCGUCCucGGGGGCGCAUa -3'
miRNA:   3'- cacUGGGU-GGUGGGcuUUCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 13155 0.67 0.736156
Target:  5'- -cGuACCCGCgGuCUCGAAggcgGGGGCGUGCa -3'
miRNA:   3'- caC-UGGGUGgU-GGGCUU----UCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 135058 0.67 0.730351
Target:  5'- -cGGCCgGCCGCCUccugcccgccuuucgGGAAGcGGuCGCGCg -3'
miRNA:   3'- caCUGGgUGGUGGG---------------CUUUC-CC-GCGUG- -5'
5468 3' -58.8 NC_001798.1 + 41445 0.67 0.726465
Target:  5'- cGUGGggggUCCAugccCCGCCgGggGGGGCGguCg -3'
miRNA:   3'- -CACU----GGGU----GGUGGgCuuUCCCGCguG- -5'
5468 3' -58.8 NC_001798.1 + 126286 0.67 0.726465
Target:  5'- -cGGCCCcuCCcCCCGAGAcGGCGC-Cg -3'
miRNA:   3'- caCUGGGu-GGuGGGCUUUcCCGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.