miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5468 3' -58.8 NC_001798.1 + 31882 0.82 0.109372
Target:  5'- -cGGCCCGCC-CCCGGAAGaGGCGCGg -3'
miRNA:   3'- caCUGGGUGGuGGGCUUUC-CCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 43000 0.79 0.177257
Target:  5'- cUGGCCCccgacggccagGCCGCCCGggGGGaGCGCGg -3'
miRNA:   3'- cACUGGG-----------UGGUGGGCuuUCC-CGCGUg -5'
5468 3' -58.8 NC_001798.1 + 62275 0.78 0.210565
Target:  5'- -aGGCCCGCCgggcgGCCCGgcGGGaGCGCGCc -3'
miRNA:   3'- caCUGGGUGG-----UGGGCuuUCC-CGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 122095 0.77 0.215742
Target:  5'- -gGGCCUggaGCCGCCCGgcGGGGgGCGCu -3'
miRNA:   3'- caCUGGG---UGGUGGGCuuUCCCgCGUG- -5'
5468 3' -58.8 NC_001798.1 + 127998 0.77 0.217843
Target:  5'- -cGGCCCGCCAaccCCCGAcAuuccccucucgccggGGGGCGCACa -3'
miRNA:   3'- caCUGGGUGGU---GGGCU-U---------------UCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 4815 0.77 0.226422
Target:  5'- -cGGCCCaccguGCCACCCGAAcccGGGcCGCGCg -3'
miRNA:   3'- caCUGGG-----UGGUGGGCUUu--CCC-GCGUG- -5'
5468 3' -58.8 NC_001798.1 + 98857 0.75 0.29334
Target:  5'- cGUGuGCCCGCC-CCCGAc-GGGCGcCACg -3'
miRNA:   3'- -CAC-UGGGUGGuGGGCUuuCCCGC-GUG- -5'
5468 3' -58.8 NC_001798.1 + 96076 0.75 0.321244
Target:  5'- -gGGCCCGCCGCcgcaucaguCCGcgcGGGGCGCGCc -3'
miRNA:   3'- caCUGGGUGGUG---------GGCuu-UCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 24695 0.74 0.351087
Target:  5'- -cGGCCCGCCgcgcccccgcGCCCGggGcccgcGGGCGCGg -3'
miRNA:   3'- caCUGGGUGG----------UGGGCuuU-----CCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 109436 0.74 0.351087
Target:  5'- -cGGCCCGCCugCgGcuGGaGGCGCGCc -3'
miRNA:   3'- caCUGGGUGGugGgCuuUC-CCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 125812 0.74 0.351087
Target:  5'- -aGACCCugcaGCUACaCCGGGAGGGCGUg- -3'
miRNA:   3'- caCUGGG----UGGUG-GGCUUUCCCGCGug -5'
5468 3' -58.8 NC_001798.1 + 7060 0.74 0.358848
Target:  5'- -cGGCCCACCcccaaacCCCGGuuGGGGCGgGCa -3'
miRNA:   3'- caCUGGGUGGu------GGGCUu-UCCCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 131323 0.73 0.365144
Target:  5'- -aGACCCACCACgCCGcccgcgccccGGGCGCGa -3'
miRNA:   3'- caCUGGGUGGUG-GGCuuu-------CCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 23819 0.73 0.382845
Target:  5'- -cGGCCCcCCGCCCcc-GGGGCGCGu -3'
miRNA:   3'- caCUGGGuGGUGGGcuuUCCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 53580 0.73 0.382845
Target:  5'- -cGGCCCACCcugcuCCCGAAGcugcuGGuGCGCGCc -3'
miRNA:   3'- caCUGGGUGGu----GGGCUUU-----CC-CGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 149238 0.73 0.382845
Target:  5'- cGUGGCCCgcgggggcgucGCCGgCCGGcgcGGGCGCGCc -3'
miRNA:   3'- -CACUGGG-----------UGGUgGGCUuu-CCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 152736 0.73 0.391078
Target:  5'- --aGCCCAcCCACCCGGc--GGCGCGCg -3'
miRNA:   3'- cacUGGGU-GGUGGGCUuucCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 29532 0.73 0.399425
Target:  5'- ---cUCCGCC-CCCGccGGGGCGCGCg -3'
miRNA:   3'- cacuGGGUGGuGGGCuuUCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 52942 0.73 0.407886
Target:  5'- -aGA-CCGCCGCCCucc-GGGCGCACg -3'
miRNA:   3'- caCUgGGUGGUGGGcuuuCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 25693 0.73 0.407886
Target:  5'- -gGGCCCGCCACggCCGccuGGGCGgGCa -3'
miRNA:   3'- caCUGGGUGGUG--GGCuuuCCCGCgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.