miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5468 3' -58.8 NC_001798.1 + 2255 0.7 0.527035
Target:  5'- -gGGCgCGCCGCCgGGGggcGGGGCgGCGCa -3'
miRNA:   3'- caCUGgGUGGUGGgCUU---UCCCG-CGUG- -5'
5468 3' -58.8 NC_001798.1 + 2363 0.69 0.626633
Target:  5'- cGUGAgcucggCCACgGCCCGc-GGGGCGCAg -3'
miRNA:   3'- -CACUg-----GGUGgUGGGCuuUCCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 2993 0.72 0.460905
Target:  5'- -cGGCCCGCgGgcCCCGGgcgcGGGGGCGCGg -3'
miRNA:   3'- caCUGGGUGgU--GGGCU----UUCCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 3545 0.68 0.646822
Target:  5'- -cGGCCCGCCGCCaUGGcguaccccAGGuGGgGCACg -3'
miRNA:   3'- caCUGGGUGGUGG-GCU--------UUC-CCgCGUG- -5'
5468 3' -58.8 NC_001798.1 + 4352 0.7 0.546601
Target:  5'- -cGGCCgAgCGCCgGcGGGGGGCGCGCc -3'
miRNA:   3'- caCUGGgUgGUGGgC-UUUCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 4815 0.77 0.226422
Target:  5'- -cGGCCCaccguGCCACCCGAAcccGGGcCGCGCg -3'
miRNA:   3'- caCUGGG-----UGGUGGGCUUu--CCC-GCGUG- -5'
5468 3' -58.8 NC_001798.1 + 5743 0.67 0.742888
Target:  5'- -gGGCCCGcgucaucccgcgcuCCGCCCcAAAGGGgGCGg -3'
miRNA:   3'- caCUGGGU--------------GGUGGGcUUUCCCgCGUg -5'
5468 3' -58.8 NC_001798.1 + 5899 0.69 0.616541
Target:  5'- -gGGCuCCGCCccgaggcggGCCCGGAcggGGGGCGgGCc -3'
miRNA:   3'- caCUG-GGUGG---------UGGGCUU---UCCCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 6220 0.7 0.576357
Target:  5'- gGUGACCCgggggGCCGgCCGggGGGaCGgGCg -3'
miRNA:   3'- -CACUGGG-----UGGUgGGCuuUCCcGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 7060 0.74 0.358848
Target:  5'- -cGGCCCACCcccaaacCCCGGuuGGGGCGgGCa -3'
miRNA:   3'- caCUGGGUGGu------GGGCUu-UCCCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 7782 0.71 0.479376
Target:  5'- -cGACCCACCGCCCccgcuggcggGAGccAGGGuCGgACa -3'
miRNA:   3'- caCUGGGUGGUGGG----------CUU--UCCC-GCgUG- -5'
5468 3' -58.8 NC_001798.1 + 9027 0.72 0.442818
Target:  5'- -aGACCCACCGCCCcccgcAGccaGCGCACg -3'
miRNA:   3'- caCUGGGUGGUGGGcuu--UCc--CGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 9542 0.68 0.686999
Target:  5'- -aGGCCCggcuuuuaACCGCCCGccAGGaGCGCcuGCg -3'
miRNA:   3'- caCUGGG--------UGGUGGGCuuUCC-CGCG--UG- -5'
5468 3' -58.8 NC_001798.1 + 10676 0.68 0.696953
Target:  5'- -gGGCCacagCGCCACCCacGAcGGGCGCAg -3'
miRNA:   3'- caCUGG----GUGGUGGGcuUU-CCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 13155 0.67 0.736156
Target:  5'- -cGuACCCGCgGuCUCGAAggcgGGGGCGUGCa -3'
miRNA:   3'- caC-UGGGUGgU-GGGCUU----UCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 15819 0.66 0.801033
Target:  5'- -aGGCCaugaggCGCCGCCCGGuucGGGGgGCcCg -3'
miRNA:   3'- caCUGG------GUGGUGGGCUu--UCCCgCGuG- -5'
5468 3' -58.8 NC_001798.1 + 16177 0.7 0.566392
Target:  5'- -cGGCCCGCgGggaCCGggGGGaCGCACg -3'
miRNA:   3'- caCUGGGUGgUg--GGCuuUCCcGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 16389 0.67 0.736156
Target:  5'- -aGGCCCGCCGCCCu---GGuacGUGUACg -3'
miRNA:   3'- caCUGGGUGGUGGGcuuuCC---CGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 17944 0.66 0.782202
Target:  5'- cGUGGCCC-CCACCUuacccguucgcaGGuccggacgucgggGGGGGCuGCGCg -3'
miRNA:   3'- -CACUGGGuGGUGGG------------CU-------------UUCCCG-CGUG- -5'
5468 3' -58.8 NC_001798.1 + 21788 0.7 0.556471
Target:  5'- -cGGCCCGCCcCCCGuccGGGCcCGCc -3'
miRNA:   3'- caCUGGGUGGuGGGCuuuCCCGcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.