miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 3' -49.3 NC_001798.1 + 54815 0.76 0.738086
Target:  5'- gGCGUcgGGCuuGGCGcCACCCCCGc -3'
miRNA:   3'- aUGCAuuUCGuuUUGCaGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 56610 0.69 0.973617
Target:  5'- -----cAGGC-AAACGUCACCCCCu- -3'
miRNA:   3'- augcauUUCGuUUUGCAGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 60375 0.66 0.9979
Target:  5'- -uCGUGAGGCGcagcuGGACGUCggggucGCCCUgGGg -3'
miRNA:   3'- auGCAUUUCGU-----UUUGCAG------UGGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 63452 0.67 0.995128
Target:  5'- cGCGccgccucGGGCuuGGCGUgGCCCCCGa -3'
miRNA:   3'- aUGCau-----UUCGuuUUGCAgUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 63935 0.69 0.976325
Target:  5'- aGCGguaGAAGCcGAGC-UCGCCCUCGGa -3'
miRNA:   3'- aUGCa--UUUCGuUUUGcAGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 68372 0.67 0.992368
Target:  5'- gUGCGUGcGGUAGGGCG-C-CCCCgCAGa -3'
miRNA:   3'- -AUGCAUuUCGUUUUGCaGuGGGG-GUC- -5'
5470 3' -49.3 NC_001798.1 + 69512 0.68 0.986901
Target:  5'- cGCGccGGAGCGGGGCGUgGCCCgCGa -3'
miRNA:   3'- aUGCa-UUUCGUUUUGCAgUGGGgGUc -5'
5470 3' -49.3 NC_001798.1 + 71095 0.7 0.960533
Target:  5'- cGCGgucGGCGu-GCG-CGCCCCCGGg -3'
miRNA:   3'- aUGCauuUCGUuuUGCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 74956 0.68 0.988028
Target:  5'- aGCGUGgaggaucugaccucGGGCGAGAgGccCGCCCCCAa -3'
miRNA:   3'- aUGCAU--------------UUCGUUUUgCa-GUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 75909 0.66 0.998253
Target:  5'- aUGCGcGAGGCcuuAGACGcccUCGCCCgCGGg -3'
miRNA:   3'- -AUGCaUUUCGu--UUUGC---AGUGGGgGUC- -5'
5470 3' -49.3 NC_001798.1 + 78210 0.66 0.99749
Target:  5'- cUACGUGGAGCuccGCGaUCGCCUggacgccauCCGGg -3'
miRNA:   3'- -AUGCAUUUCGuuuUGC-AGUGGG---------GGUC- -5'
5470 3' -49.3 NC_001798.1 + 79680 0.66 0.998253
Target:  5'- aUGCGUcccGAGGCGGccuGCGUgcgGCCCCCGc -3'
miRNA:   3'- -AUGCA---UUUCGUUu--UGCAg--UGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 79879 0.71 0.948171
Target:  5'- gGCGgccGAGCuguACGUCGCCCUCGu -3'
miRNA:   3'- aUGCau-UUCGuuuUGCAGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 79957 0.69 0.978823
Target:  5'- gGCGUccGGAGCGGcggcgccGCGUCcgccgccggGCCCCCGGg -3'
miRNA:   3'- aUGCA--UUUCGUUu------UGCAG---------UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 80551 0.68 0.986901
Target:  5'- gGCGgggGGGcGCGAGGCGUCccuCCCCgAGg -3'
miRNA:   3'- aUGCa--UUU-CGUUUUGCAGu--GGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 81329 0.66 0.997862
Target:  5'- cACGgcAGGCGGAccCGgggguccUCGCCCCCAc -3'
miRNA:   3'- aUGCauUUCGUUUu-GC-------AGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 83386 0.68 0.98515
Target:  5'- aACGUGuuguuGGCGu-GgGUCACCCCgAGg -3'
miRNA:   3'- aUGCAUu----UCGUuuUgCAGUGGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 83685 0.68 0.986901
Target:  5'- -cUGgcGGGCGGGACGguggcUCGCCCCCu- -3'
miRNA:   3'- auGCauUUCGUUUUGC-----AGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 85225 0.72 0.928056
Target:  5'- gACGUGGAGagcGACGUCGCgCCCGc -3'
miRNA:   3'- aUGCAUUUCguuUUGCAGUGgGGGUc -5'
5470 3' -49.3 NC_001798.1 + 87381 0.7 0.970692
Target:  5'- cUGCGcgGAGGgGGGGCGUgCgACCCCCGGu -3'
miRNA:   3'- -AUGCa-UUUCgUUUUGCA-G-UGGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.