miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 3' -49.3 NC_001798.1 + 79 0.66 0.998048
Target:  5'- gGCGgcGGGCGGGcggcagggcagccccGCG-CGCCCCCu- -3'
miRNA:   3'- aUGCauUUCGUUU---------------UGCaGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 1372 0.67 0.9934
Target:  5'- -------cGCAcgGCGUCGCgCCCCAGc -3'
miRNA:   3'- augcauuuCGUuuUGCAGUG-GGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 2975 0.68 0.986901
Target:  5'- gGCGUGcGGCGGGGCGgccgGCCCgCGGg -3'
miRNA:   3'- aUGCAUuUCGUUUUGCag--UGGGgGUC- -5'
5470 3' -49.3 NC_001798.1 + 4120 0.71 0.943537
Target:  5'- gGCGggcucGGcCGGGGCGcCGCCCCCGGg -3'
miRNA:   3'- aUGCauu--UC-GUUUUGCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 9615 0.68 0.989921
Target:  5'- gGCGgccAGCAAcAGgGcCGCCCCCAGc -3'
miRNA:   3'- aUGCauuUCGUU-UUgCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 11823 0.73 0.896951
Target:  5'- aACGUcccguuGGCAgaGAGCGcCACCCCCAa -3'
miRNA:   3'- aUGCAuu----UCGU--UUUGCaGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 14279 0.68 0.991211
Target:  5'- cACGauGAGgGGGACGgcaaaGCCCCCGGa -3'
miRNA:   3'- aUGCauUUCgUUUUGCag---UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 31388 0.7 0.956664
Target:  5'- gGCGgaGGGCAGGACG-C-CCCCCGc -3'
miRNA:   3'- aUGCauUUCGUUUUGCaGuGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 31868 0.72 0.928056
Target:  5'- cGCGgagGGGGCG--GCGgccCGCCCCCGGa -3'
miRNA:   3'- aUGCa--UUUCGUuuUGCa--GUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 35196 0.67 0.992368
Target:  5'- gGCGgcGGGCcccuGCGUucguugcugccgCGCCCCCGGu -3'
miRNA:   3'- aUGCauUUCGuuu-UGCA------------GUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 36634 0.7 0.955455
Target:  5'- gGCGgccGGGCGGGggcgcgcuuuccccGCGUCGCCCCuCGGg -3'
miRNA:   3'- aUGCau-UUCGUUU--------------UGCAGUGGGG-GUC- -5'
5470 3' -49.3 NC_001798.1 + 44206 0.67 0.9934
Target:  5'- aGCGUgguGAGGCc--GCG-CugCCCCAGg -3'
miRNA:   3'- aUGCA---UUUCGuuuUGCaGugGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 44355 0.88 0.233987
Target:  5'- aGCGUGGAGCGcAAACGUCGCCUCCAa -3'
miRNA:   3'- aUGCAUUUCGU-UUUGCAGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 47236 0.66 0.997016
Target:  5'- gGCGUGucGUuGGGCG--GCCCCCGGc -3'
miRNA:   3'- aUGCAUuuCGuUUUGCagUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 48320 0.67 0.995842
Target:  5'- gUugGUGAAucccgacgcggcGCAGGACGUCgacgcgaccgcgGCCgCCCGGg -3'
miRNA:   3'- -AugCAUUU------------CGUUUUGCAG------------UGG-GGGUC- -5'
5470 3' -49.3 NC_001798.1 + 48756 0.67 0.994316
Target:  5'- --gGUGGAcGCGAGAUGUCAgUCCUCGGg -3'
miRNA:   3'- augCAUUU-CGUUUUGCAGU-GGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 50723 0.69 0.978823
Target:  5'- cUGCGUGGGGaCGAGGCc-CACCCCCc- -3'
miRNA:   3'- -AUGCAUUUC-GUUUUGcaGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 51106 0.69 0.983227
Target:  5'- gAUGgcGAGCGAAGaGcCGCCCCCGc -3'
miRNA:   3'- aUGCauUUCGUUUUgCaGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 51172 0.66 0.996469
Target:  5'- cGCGUccGAGGCccGGGCGgcggCGCCCCCc- -3'
miRNA:   3'- aUGCA--UUUCGu-UUUGCa---GUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 52294 0.69 0.976325
Target:  5'- gACGUGGAGCAGGaggcgcuguuucGCGcCcuGCCCCUGGg -3'
miRNA:   3'- aUGCAUUUCGUUU------------UGCaG--UGGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.