miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 3' -49.3 NC_001798.1 + 44355 0.88 0.233987
Target:  5'- aGCGUGGAGCGcAAACGUCGCCUCCAa -3'
miRNA:   3'- aUGCAUUUCGU-UUUGCAGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 54815 0.76 0.738086
Target:  5'- gGCGUcgGGCuuGGCGcCACCCCCGc -3'
miRNA:   3'- aUGCAuuUCGuuUUGCaGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 111077 0.76 0.778354
Target:  5'- gACGUGcucGGGCGAGACGgaccCCCCCGGg -3'
miRNA:   3'- aUGCAU---UUCGUUUUGCagu-GGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 121938 0.75 0.788083
Target:  5'- aGCGggccguGCAGGACGUCACCCgCCGc -3'
miRNA:   3'- aUGCauuu--CGUUUUGCAGUGGG-GGUc -5'
5470 3' -49.3 NC_001798.1 + 125767 0.74 0.834183
Target:  5'- gACGUuuGGcCGAGACG-CACCUCCGGg -3'
miRNA:   3'- aUGCAuuUC-GUUUUGCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 151847 0.73 0.896951
Target:  5'- gGCGUGAGGCGGGAcccccgcgcCGUguCCCCCGu -3'
miRNA:   3'- aUGCAUUUCGUUUU---------GCAguGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 11823 0.73 0.896951
Target:  5'- aACGUcccguuGGCAgaGAGCGcCACCCCCAa -3'
miRNA:   3'- aUGCAuu----UCGU--UUUGCaGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 90655 0.72 0.910183
Target:  5'- cGCGgaGAugccGCGGAACGaCGCCCCCGGc -3'
miRNA:   3'- aUGCauUU----CGUUUUGCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 122362 0.72 0.910183
Target:  5'- gGCGUGGGGCGGgcGACGcgccCGCCCCCc- -3'
miRNA:   3'- aUGCAUUUCGUU--UUGCa---GUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 108665 0.72 0.910183
Target:  5'- gACGgccGAcGCAAcGCGcCGCCCCCGGg -3'
miRNA:   3'- aUGCa--UUuCGUUuUGCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 132155 0.72 0.922364
Target:  5'- -cCGgcGGGCGGGGCGcCcCCCCCGGa -3'
miRNA:   3'- auGCauUUCGUUUUGCaGuGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 31868 0.72 0.928056
Target:  5'- cGCGgagGGGGCG--GCGgccCGCCCCCGGa -3'
miRNA:   3'- aUGCa--UUUCGUuuUGCa--GUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 85225 0.72 0.928056
Target:  5'- gACGUGGAGagcGACGUCGCgCCCGc -3'
miRNA:   3'- aUGCAUUUCguuUUGCAGUGgGGGUc -5'
5470 3' -49.3 NC_001798.1 + 119261 0.72 0.935577
Target:  5'- aUACGUGAAcgcgcuccugcagauGCAGAGCGUCacgcgagaaGCCgCCCAGc -3'
miRNA:   3'- -AUGCAUUU---------------CGUUUUGCAG---------UGG-GGGUC- -5'
5470 3' -49.3 NC_001798.1 + 4120 0.71 0.943537
Target:  5'- gGCGggcucGGcCGGGGCGcCGCCCCCGGg -3'
miRNA:   3'- aUGCauu--UC-GUUUUGCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 79879 0.71 0.948171
Target:  5'- gGCGgccGAGCuguACGUCGCCCUCGu -3'
miRNA:   3'- aUGCau-UUCGuuuUGCAGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 149651 0.71 0.952545
Target:  5'- cGCGUGAGGCcGGGCGccgggUCGCgggCCCCGGg -3'
miRNA:   3'- aUGCAUUUCGuUUUGC-----AGUG---GGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 36634 0.7 0.955455
Target:  5'- gGCGgccGGGCGGGggcgcgcuuuccccGCGUCGCCCCuCGGg -3'
miRNA:   3'- aUGCau-UUCGUUU--------------UGCAGUGGGG-GUC- -5'
5470 3' -49.3 NC_001798.1 + 31388 0.7 0.956664
Target:  5'- gGCGgaGGGCAGGACG-C-CCCCCGc -3'
miRNA:   3'- aUGCauUUCGUUUUGCaGuGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 103185 0.7 0.960533
Target:  5'- gUGCGgucGGGCGGAAccuCGUC-CCCCCGGc -3'
miRNA:   3'- -AUGCau-UUCGUUUU---GCAGuGGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.