miRNA display CGI


Results 41 - 60 of 253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 115009 0.66 0.613663
Target:  5'- uCACGGCgCUggugaugggcaaggCCgugcggagCCUGGACGACGuGGGCc -3'
miRNA:   3'- -GUGCCG-GG--------------GGa-------GGGCCUGCUGC-UCCG- -5'
5471 3' -63.6 NC_001798.1 + 24415 0.66 0.606955
Target:  5'- gGCGGCggCgUCgCCGGcCGACGAGcGCg -3'
miRNA:   3'- gUGCCGggGgAG-GGCCuGCUGCUC-CG- -5'
5471 3' -63.6 NC_001798.1 + 58875 0.66 0.606955
Target:  5'- aCugGGUCCCgggCCCGGAacccccgGAGGCg -3'
miRNA:   3'- -GugCCGGGGga-GGGCCUgcug---CUCCG- -5'
5471 3' -63.6 NC_001798.1 + 23622 0.66 0.606955
Target:  5'- -cCGGCCCggaCC-CCCGcGGCGACcgcGGGCc -3'
miRNA:   3'- guGCCGGG---GGaGGGC-CUGCUGc--UCCG- -5'
5471 3' -63.6 NC_001798.1 + 142484 0.66 0.606955
Target:  5'- gACGGCCCCCgaggCGG-CG-CGGGGg -3'
miRNA:   3'- gUGCCGGGGGagg-GCCuGCuGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 102363 0.66 0.606955
Target:  5'- gGCGGCCgccggaagcccaCCCgCCUGGcggucgGCGGCGAuGGCc -3'
miRNA:   3'- gUGCCGG------------GGGaGGGCC------UGCUGCU-CCG- -5'
5471 3' -63.6 NC_001798.1 + 67113 0.66 0.605998
Target:  5'- cCGCGGCCCcgacguCCUucucggcgccgccCCUGGcaucGCGACGGGcGCa -3'
miRNA:   3'- -GUGCCGGG------GGA-------------GGGCC----UGCUGCUC-CG- -5'
5471 3' -63.6 NC_001798.1 + 4070 0.66 0.601212
Target:  5'- gGCGGCCCgCggucgccgcgggggUCCGGGC--CGGGGCg -3'
miRNA:   3'- gUGCCGGGgGa-------------GGGCCUGcuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 36254 0.66 0.597387
Target:  5'- cCGCGcGCUCCUguguggacCCCGGgguggGCGGCGGGGg -3'
miRNA:   3'- -GUGC-CGGGGGa-------GGGCC-----UGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 29870 0.66 0.597387
Target:  5'- --aGGCCCCCccuuuucCCCGGACcACccGGCu -3'
miRNA:   3'- gugCCGGGGGa------GGGCCUGcUGcuCCG- -5'
5471 3' -63.6 NC_001798.1 + 156 0.66 0.597387
Target:  5'- gCGCcGCCCCUcccCCCGcGCGccGCGGGGCu -3'
miRNA:   3'- -GUGcCGGGGGa--GGGCcUGC--UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 58107 0.66 0.597387
Target:  5'- uCGCGGCCgCCCagggCCCGG-CGuCuGGGUc -3'
miRNA:   3'- -GUGCCGG-GGGa---GGGCCuGCuGcUCCG- -5'
5471 3' -63.6 NC_001798.1 + 75852 0.66 0.597387
Target:  5'- gCGCuGGCCCaguuugCCCgGGGCGAagagaugcggguCGAGGCg -3'
miRNA:   3'- -GUG-CCGGGgga---GGG-CCUGCU------------GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 132133 0.66 0.597387
Target:  5'- gGCGGCCCugcgCCgCCgGGggccgGCgGGCGGGGCg -3'
miRNA:   3'- gUGCCGGG----GGaGGgCC-----UG-CUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 154494 0.66 0.597387
Target:  5'- gCGCcGCCCCUcccCCCGcGCGccGCGGGGCu -3'
miRNA:   3'- -GUGcCGGGGGa--GGGCcUGC--UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 18206 0.66 0.597387
Target:  5'- gGCGcGCagCCUCgCCGGGgGACGguGGGCg -3'
miRNA:   3'- gUGC-CGggGGAG-GGCCUgCUGC--UCCG- -5'
5471 3' -63.6 NC_001798.1 + 51751 0.66 0.596432
Target:  5'- -uCGGCgggcaaaaaccagCCCCUCCCGcGCGAUG-GGUu -3'
miRNA:   3'- guGCCG-------------GGGGAGGGCcUGCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 19035 0.66 0.593566
Target:  5'- -cCGGCCCCCaccggcuauaccaCCUgugGGugGuCGGGGCg -3'
miRNA:   3'- guGCCGGGGGa------------GGG---CCugCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 70209 0.66 0.587842
Target:  5'- -cCGGCCgCCCUCCCccucGAgcgagcCGGCG-GGCa -3'
miRNA:   3'- guGCCGG-GGGAGGGc---CU------GCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 24702 0.66 0.587842
Target:  5'- cCGC-GCCCCCgcgCCCGGGgccCG-CGGGcGCg -3'
miRNA:   3'- -GUGcCGGGGGa--GGGCCU---GCuGCUC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.