miRNA display CGI


Results 21 - 40 of 253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 74048 0.66 0.626134
Target:  5'- gGCGGCCUgcguugcguguUUUCgCGGguguACGGCGAGGUg -3'
miRNA:   3'- gUGCCGGG-----------GGAGgGCC----UGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 85714 0.66 0.626134
Target:  5'- --aGGCCgacgCCCUcCCCGGGCGcCGccaAGGUg -3'
miRNA:   3'- gugCCGG----GGGA-GGGCCUGCuGC---UCCG- -5'
5471 3' -63.6 NC_001798.1 + 92404 0.66 0.626134
Target:  5'- cCGCGGUCgUCgggUCCCGcACGACG-GGCc -3'
miRNA:   3'- -GUGCCGGgGG---AGGGCcUGCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 124134 0.66 0.626134
Target:  5'- gGCGcGCCCCCg-CCGuGGCG--GAGGCc -3'
miRNA:   3'- gUGC-CGGGGGagGGC-CUGCugCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 20205 0.66 0.626134
Target:  5'- aAUGcGCCUcgaCCUCCCGGAUuGCGuuucgcAGGCg -3'
miRNA:   3'- gUGC-CGGG---GGAGGGCCUGcUGC------UCCG- -5'
5471 3' -63.6 NC_001798.1 + 44598 0.66 0.625175
Target:  5'- -cCGGCuCCCCUCgaaccucuccuguUCGGugGGCGcgcccgugGGGCc -3'
miRNA:   3'- guGCCG-GGGGAG-------------GGCCugCUGC--------UCCG- -5'
5471 3' -63.6 NC_001798.1 + 11203 0.66 0.622295
Target:  5'- aACGGCCCgcuuggaccuagaCCUCuuGGGgGgccgucgggccacuGCGGGGCc -3'
miRNA:   3'- gUGCCGGG-------------GGAGggCCUgC--------------UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 30427 0.66 0.616539
Target:  5'- cCAC-GCCCCCggCCCGGccccCGGcCGAGcGCc -3'
miRNA:   3'- -GUGcCGGGGGa-GGGCCu---GCU-GCUC-CG- -5'
5471 3' -63.6 NC_001798.1 + 56159 0.66 0.616539
Target:  5'- gGCGGCUUauaaCgCCCgggGGACGGCGGGGg -3'
miRNA:   3'- gUGCCGGGg---GaGGG---CCUGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 59212 0.66 0.616539
Target:  5'- uCGCcGCUCCCgCCCGcGACccCGGGGCu -3'
miRNA:   3'- -GUGcCGGGGGaGGGC-CUGcuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 95560 0.66 0.616539
Target:  5'- aCGCGGCCCUgga--GGugGcccACGAGGCg -3'
miRNA:   3'- -GUGCCGGGGgagggCCugC---UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 95996 0.66 0.616539
Target:  5'- aCACaaGGCCCCgaCUCCgcgaaucaCGGcacacCGGCGGGGCg -3'
miRNA:   3'- -GUG--CCGGGG--GAGG--------GCCu----GCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 111092 0.66 0.616539
Target:  5'- gACGGaCCCC-CCCGGGgucaGGCGuuGCg -3'
miRNA:   3'- gUGCCgGGGGaGGGCCUg---CUGCucCG- -5'
5471 3' -63.6 NC_001798.1 + 476 0.66 0.616539
Target:  5'- cCGCGGCCgCCUCCCccGCGccccGCcccgGGGGCu -3'
miRNA:   3'- -GUGCCGGgGGAGGGccUGC----UG----CUCCG- -5'
5471 3' -63.6 NC_001798.1 + 102206 0.66 0.616539
Target:  5'- gCGCGGCgCgCCgggagucgaCCGGGCGcggcuCGGGGCg -3'
miRNA:   3'- -GUGCCGgG-GGag-------GGCCUGCu----GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 111358 0.66 0.616539
Target:  5'- aCAUGcGCCg-CUCCCGGugGAUGAGa- -3'
miRNA:   3'- -GUGC-CGGggGAGGGCCugCUGCUCcg -5'
5471 3' -63.6 NC_001798.1 + 122611 0.66 0.616539
Target:  5'- cCugGGCCaCUCUaUCCGGGCcGCGcuccaAGGCg -3'
miRNA:   3'- -GugCCGG-GGGA-GGGCCUGcUGC-----UCCG- -5'
5471 3' -63.6 NC_001798.1 + 31955 0.66 0.616539
Target:  5'- cCGCGcucGCCCCUcgCCCcccaGGGgGugGGGGCc -3'
miRNA:   3'- -GUGC---CGGGGGa-GGG----CCUgCugCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 150022 0.66 0.616539
Target:  5'- cCGCGGUCgCCCgaguccgagUCCGGGgccCGGCGcGGCg -3'
miRNA:   3'- -GUGCCGG-GGGa--------GGGCCU---GCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 17945 0.66 0.613663
Target:  5'- -gUGGCCCCCaccUuacccguucgcaggUCCGGACGuCGGGGg -3'
miRNA:   3'- guGCCGGGGG---A--------------GGGCCUGCuGCUCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.