miRNA display CGI


Results 21 - 40 of 253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 91784 0.74 0.218698
Target:  5'- cCAC-GCCCCCUgCCGauGACGcGCGGGGCg -3'
miRNA:   3'- -GUGcCGGGGGAgGGC--CUGC-UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2548 0.74 0.218698
Target:  5'- gCGCGGCCCCCgcgggagGGGCGgccGCGGGGCg -3'
miRNA:   3'- -GUGCCGGGGGaggg---CCUGC---UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 131528 0.74 0.223779
Target:  5'- aCACGGaCCcgucaCCUUCCCGGACG-CGAGcGCc -3'
miRNA:   3'- -GUGCC-GG-----GGGAGGGCCUGCuGCUC-CG- -5'
5471 3' -63.6 NC_001798.1 + 46921 0.74 0.223779
Target:  5'- cCugGGCCCCCacugacucaUCgCCGcGAUGACGGGGa -3'
miRNA:   3'- -GugCCGGGGG---------AG-GGC-CUGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 25615 0.74 0.225839
Target:  5'- gGCgGGCCCCC-CCCGGagugguccgccgagcGCGGCG-GGCu -3'
miRNA:   3'- gUG-CCGGGGGaGGGCC---------------UGCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 35788 0.74 0.22896
Target:  5'- cUugGGUCUCCUUcgUCGGGCGGCGGGGg -3'
miRNA:   3'- -GugCCGGGGGAG--GGCCUGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 149984 0.74 0.234242
Target:  5'- gCGCGGCgCCCg--CGGACGcCGGGGCg -3'
miRNA:   3'- -GUGCCGgGGGaggGCCUGCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 61716 0.73 0.239626
Target:  5'- gACGGCCCagugCCgcaCGGACGAgGAGGCc -3'
miRNA:   3'- gUGCCGGG----GGaggGCCUGCUgCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 145560 0.73 0.239626
Target:  5'- uCGCGccggcGCCCCCUCCCGG-CGcuucCGGGGUc -3'
miRNA:   3'- -GUGC-----CGGGGGAGGGCCuGCu---GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 123906 0.73 0.241808
Target:  5'- aCACGGCCCCCgaaUCCgGGGCGuGCugugcccuggguccgGGGGCc -3'
miRNA:   3'- -GUGCCGGGGG---AGGgCCUGC-UG---------------CUCCG- -5'
5471 3' -63.6 NC_001798.1 + 63519 0.73 0.245112
Target:  5'- gCACGGCCUCgUCgCGGcUGAUGAGGUc -3'
miRNA:   3'- -GUGCCGGGGgAGgGCCuGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 57725 0.73 0.2622
Target:  5'- -cCGGCCCCCgcgaaggaCCGGugGGCGcgcccGGCg -3'
miRNA:   3'- guGCCGGGGGag------GGCCugCUGCu----CCG- -5'
5471 3' -63.6 NC_001798.1 + 32366 0.73 0.2622
Target:  5'- gGCGGCCCCgagCCCGGggcccGCGACccGGCg -3'
miRNA:   3'- gUGCCGGGGga-GGGCC-----UGCUGcuCCG- -5'
5471 3' -63.6 NC_001798.1 + 143145 0.73 0.268107
Target:  5'- gCGCGGCCgUC-CCCGaaaACGACGAGGUc -3'
miRNA:   3'- -GUGCCGGgGGaGGGCc--UGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 94991 0.73 0.268107
Target:  5'- gGCGGCCgCCUgggCCCcgcaGGGCGGCGcGGGCc -3'
miRNA:   3'- gUGCCGG-GGGa--GGG----CCUGCUGC-UCCG- -5'
5471 3' -63.6 NC_001798.1 + 23526 0.73 0.268107
Target:  5'- gGCGGgaCCCUCggcgCGGACGACGAGGa -3'
miRNA:   3'- gUGCCggGGGAGg---GCCUGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 5567 0.72 0.274121
Target:  5'- -uUGGCCCCCgccggCCCcaaagGGGcCGGCGAGGUc -3'
miRNA:   3'- guGCCGGGGGa----GGG-----CCU-GCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 4814 0.72 0.27901
Target:  5'- -cCGGCCCaCCgugccacccgaaCCCGGgccgcGCGGCGGGGCg -3'
miRNA:   3'- guGCCGGG-GGa-----------GGGCC-----UGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2987 0.72 0.280243
Target:  5'- gGCGGCCggCCCgcgggcCCCGGGCG-CGGGGg -3'
miRNA:   3'- gUGCCGG--GGGa-----GGGCCUGCuGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 111608 0.72 0.280243
Target:  5'- gGCGGCCUCCUggagcCCCGGggGCGGCagacucgcgucgGGGGCg -3'
miRNA:   3'- gUGCCGGGGGA-----GGGCC--UGCUG------------CUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.