miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 7722 0.67 0.559398
Target:  5'- cCACcgGGCCUuuUUUCGGACGGugauCGAGGUg -3'
miRNA:   3'- -GUG--CCGGGggAGGGCCUGCU----GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 8061 0.68 0.512024
Target:  5'- uGCGGaCCCCCgguccugaccacgUCCCGGG-GACaGGGUg -3'
miRNA:   3'- gUGCC-GGGGG-------------AGGGCCUgCUGcUCCG- -5'
5471 3' -63.6 NC_001798.1 + 8288 0.71 0.347459
Target:  5'- gCACuGcCCCCCUCCUGGGgGGgGGGGg -3'
miRNA:   3'- -GUGcC-GGGGGAGGGCCUgCUgCUCCg -5'
5471 3' -63.6 NC_001798.1 + 8782 0.68 0.485829
Target:  5'- --aGGCUUCUgCCgGGACgGGCGAGGCc -3'
miRNA:   3'- gugCCGGGGGaGGgCCUG-CUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 11203 0.66 0.622295
Target:  5'- aACGGCCCgcuuggaccuagaCCUCuuGGGgGgccgucgggccacuGCGGGGCc -3'
miRNA:   3'- gUGCCGGG-------------GGAGggCCUgC--------------UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 12566 0.68 0.512938
Target:  5'- gGCGcGUCgUCaUCCCGGAUGugGGGGa -3'
miRNA:   3'- gUGC-CGGgGG-AGGGCCUGCugCUCCg -5'
5471 3' -63.6 NC_001798.1 + 15020 0.69 0.42544
Target:  5'- aGCGGCCCaagaaUUCCUGGcgggaGCGugG-GGCg -3'
miRNA:   3'- gUGCCGGGg----GAGGGCC-----UGCugCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 15271 0.71 0.340245
Target:  5'- gGCGGUgCCCCgggUUCCGGGCGugGcGGUg -3'
miRNA:   3'- gUGCCG-GGGG---AGGGCCUGCugCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 15329 0.66 0.626134
Target:  5'- gAgGGCCCCggCgcgguagCGGGgGGCGAGGCg -3'
miRNA:   3'- gUgCCGGGGgaGg------GCCUgCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 16175 0.67 0.559398
Target:  5'- gGCGGCCCgCggggaCCgGGGgGACGcacGGGCc -3'
miRNA:   3'- gUGCCGGGgGa----GGgCCUgCUGC---UCCG- -5'
5471 3' -63.6 NC_001798.1 + 16604 0.72 0.286473
Target:  5'- aGCGGCCCaggggCUCgugaCGGACGACGcgccgGGGCa -3'
miRNA:   3'- gUGCCGGGg----GAGg---GCCUGCUGC-----UCCG- -5'
5471 3' -63.6 NC_001798.1 + 17224 0.74 0.213716
Target:  5'- gCACGGCCgCCUUUCGGGguCGcGCGGGGCc -3'
miRNA:   3'- -GUGCCGGgGGAGGGCCU--GC-UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 17945 0.66 0.613663
Target:  5'- -gUGGCCCCCaccUuacccguucgcaggUCCGGACGuCGGGGg -3'
miRNA:   3'- guGCCGGGGG---A--------------GGGCCUGCuGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 18206 0.66 0.597387
Target:  5'- gGCGcGCagCCUCgCCGGGgGACGguGGGCg -3'
miRNA:   3'- gUGC-CGggGGAG-GGCCUgCUGC--UCCG- -5'
5471 3' -63.6 NC_001798.1 + 19035 0.66 0.593566
Target:  5'- -cCGGCCCCCaccggcuauaccaCCUgugGGugGuCGGGGCg -3'
miRNA:   3'- guGCCGGGGGa------------GGG---CCugCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 19493 0.67 0.540647
Target:  5'- --gGGCCCCCgcuggCCGuuGGCGACGAguGGCc -3'
miRNA:   3'- gugCCGGGGGag---GGC--CUGCUGCU--CCG- -5'
5471 3' -63.6 NC_001798.1 + 20024 0.68 0.512024
Target:  5'- gAgGGCCCCC-CCUccgugucggaaugGGACG-CGAGGg -3'
miRNA:   3'- gUgCCGGGGGaGGG-------------CCUGCuGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 20205 0.66 0.626134
Target:  5'- aAUGcGCCUcgaCCUCCCGGAUuGCGuuucgcAGGCg -3'
miRNA:   3'- gUGC-CGGG---GGAGGGCCUGcUGC------UCCG- -5'
5471 3' -63.6 NC_001798.1 + 20349 0.66 0.626134
Target:  5'- gGCGGUUggCgCUgCCGGGCGGguuCGGGGCg -3'
miRNA:   3'- gUGCCGG--GgGAgGGCCUGCU---GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 21786 0.7 0.369751
Target:  5'- aACGGCCCgCCccccgUCCGGGCccgccuCGGGGCg -3'
miRNA:   3'- gUGCCGGG-GGa----GGGCCUGcu----GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.