miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 156 0.66 0.597387
Target:  5'- gCGCcGCCCCUcccCCCGcGCGccGCGGGGCu -3'
miRNA:   3'- -GUGcCGGGGGa--GGGCcUGC--UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 419 0.71 0.340245
Target:  5'- uCGCGGCagCCCCUCCCccccGCGcgccACGGGGCu -3'
miRNA:   3'- -GUGCCG--GGGGAGGGcc--UGC----UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 476 0.66 0.616539
Target:  5'- cCGCGGCCgCCUCCCccGCGccccGCcccgGGGGCu -3'
miRNA:   3'- -GUGCCGGgGGAGGGccUGC----UG----CUCCG- -5'
5471 3' -63.6 NC_001798.1 + 1490 0.67 0.559398
Target:  5'- cCAUGGCgucgCCCgcgCCCGaGGCGGCGGcccGGCc -3'
miRNA:   3'- -GUGCCGg---GGGa--GGGC-CUGCUGCU---CCG- -5'
5471 3' -63.6 NC_001798.1 + 1673 0.67 0.54158
Target:  5'- gCGCGGCCUCCacgcgcgcgaagaccCCCGGcccgaacacGCGGCcgGAGGCc -3'
miRNA:   3'- -GUGCCGGGGGa--------------GGGCC---------UGCUG--CUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2122 0.68 0.46814
Target:  5'- cCGCGGCCagguCCUcgCCCGGcaGCGGCGAGu- -3'
miRNA:   3'- -GUGCCGGg---GGA--GGGCC--UGCUGCUCcg -5'
5471 3' -63.6 NC_001798.1 + 2249 0.66 0.587842
Target:  5'- gGCGGCgggcgCgCCg-CCGGGgGGCGGGGCg -3'
miRNA:   3'- gUGCCG-----GgGGagGGCCUgCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2374 0.75 0.178963
Target:  5'- cCACGGCCCgcggggcgcaguaggCCUCCaGGGCGGCGgccgaGGGCg -3'
miRNA:   3'- -GUGCCGGG---------------GGAGGgCCUGCUGC-----UCCG- -5'
5471 3' -63.6 NC_001798.1 + 2548 0.74 0.218698
Target:  5'- gCGCGGCCCCCgcgggagGGGCGgccGCGGGGCg -3'
miRNA:   3'- -GUGCCGGGGGaggg---CCUGC---UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2592 0.68 0.46814
Target:  5'- gCGCGGCuCUUCUUCgGGGgGcGCGGGGCg -3'
miRNA:   3'- -GUGCCG-GGGGAGGgCCUgC-UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2628 0.7 0.40096
Target:  5'- gGCGGCgCCCUggCCGG--GGCGGGGCu -3'
miRNA:   3'- gUGCCG-GGGGagGGCCugCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2987 0.72 0.280243
Target:  5'- gGCGGCCggCCCgcgggcCCCGGGCG-CGGGGg -3'
miRNA:   3'- gUGCCGG--GGGa-----GGGCCUGCuGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 3772 0.66 0.635733
Target:  5'- --gGGCgCCCacaCGGGCGcCGGGGCg -3'
miRNA:   3'- gugCCGgGGGaggGCCUGCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 4070 0.66 0.601212
Target:  5'- gGCGGCCCgCggucgccgcgggggUCCGGGC--CGGGGCg -3'
miRNA:   3'- gUGCCGGGgGa-------------GGGCCUGcuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 4734 0.77 0.13957
Target:  5'- gACGGCCUCC--CCGGACGcCGGGGCc -3'
miRNA:   3'- gUGCCGGGGGagGGCCUGCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 4814 0.72 0.27901
Target:  5'- -cCGGCCCaCCgugccacccgaaCCCGGgccgcGCGGCGGGGCg -3'
miRNA:   3'- guGCCGGG-GGa-----------GGGCC-----UGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 5567 0.72 0.274121
Target:  5'- -uUGGCCCCCgccggCCCcaaagGGGcCGGCGAGGUc -3'
miRNA:   3'- guGCCGGGGGa----GGG-----CCU-GCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 5619 0.67 0.549998
Target:  5'- gGCGGCUCCgC-CCCaaaGGgGGCGGGGCc -3'
miRNA:   3'- gUGCCGGGG-GaGGGc--CUgCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 5895 0.72 0.30318
Target:  5'- cCGCGGgCUCCgccccgaggcgggCCCGGACGG-GGGGCg -3'
miRNA:   3'- -GUGCCgGGGGa------------GGGCCUGCUgCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 7179 0.75 0.204044
Target:  5'- gACgGGCCCCCgcaCCgGGGCGGCGAccaugauccGGCg -3'
miRNA:   3'- gUG-CCGGGGGa--GGgCCUGCUGCU---------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.