miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 154494 0.66 0.597387
Target:  5'- gCGCcGCCCCUcccCCCGcGCGccGCGGGGCu -3'
miRNA:   3'- -GUGcCGGGGGa--GGGCcUGC--UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 154103 0.68 0.50383
Target:  5'- gCGCGGCCggcgCCggggacCCCGG-CGGCGGGGa -3'
miRNA:   3'- -GUGCCGGg---GGa-----GGGCCuGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 153780 0.69 0.40902
Target:  5'- uGCGGCCCgCgCUCCuugcgCGGcgGCGGCGGGGg -3'
miRNA:   3'- gUGCCGGG-G-GAGG-----GCC--UGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 153226 0.7 0.393001
Target:  5'- gACGGCCCgggCCCGcGGCGGCgGAGGa -3'
miRNA:   3'- gUGCCGGGggaGGGC-CUGCUG-CUCCg -5'
5471 3' -63.6 NC_001798.1 + 153061 0.7 0.40096
Target:  5'- gCGCcGCCCCCUggggcgggCGGAgCGGCGGGGCg -3'
miRNA:   3'- -GUGcCGGGGGAgg------GCCU-GCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 152725 0.66 0.635733
Target:  5'- aGgGGCCgaucagcccaCCCaCCCGGcgGCGcGCGAGGCu -3'
miRNA:   3'- gUgCCGG----------GGGaGGGCC--UGC-UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 152554 0.69 0.450788
Target:  5'- gGCGGCCCCgUCCCcggGGACcaACcGGGUg -3'
miRNA:   3'- gUGCCGGGGgAGGG---CCUGc-UGcUCCG- -5'
5471 3' -63.6 NC_001798.1 + 150900 0.68 0.494792
Target:  5'- cCGCcGCCCCCgcgCCgGGGCGcucuucGgGGGGCg -3'
miRNA:   3'- -GUGcCGGGGGa--GGgCCUGC------UgCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 150562 0.68 0.510198
Target:  5'- aGCGGCCCggggCCCGcggggcggcgcggaGACGGCGGGGg -3'
miRNA:   3'- gUGCCGGGgga-GGGC--------------CUGCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 150429 0.66 0.635733
Target:  5'- gGCGGCgCggggcggaCU-CCGGACGcGCGGGGCg -3'
miRNA:   3'- gUGCCGgGg-------GAgGGCCUGC-UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 150179 0.76 0.165103
Target:  5'- cCGCcGCCCCCUCCgCGG-CGugGGGGg -3'
miRNA:   3'- -GUGcCGGGGGAGG-GCCuGCugCUCCg -5'
5471 3' -63.6 NC_001798.1 + 150070 0.75 0.204044
Target:  5'- -uUGGCCCCCacccCCUGGGgGGCGAGGg -3'
miRNA:   3'- guGCCGGGGGa---GGGCCUgCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 150022 0.66 0.616539
Target:  5'- cCGCGGUCgCCCgaguccgagUCCGGGgccCGGCGcGGCg -3'
miRNA:   3'- -GUGCCGG-GGGa--------GGGCCU---GCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 149984 0.74 0.234242
Target:  5'- gCGCGGCgCCCg--CGGACGcCGGGGCg -3'
miRNA:   3'- -GUGCCGgGGGaggGCCUGCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 149270 0.68 0.494792
Target:  5'- gGCGcGCCCUgCUCCCGaGACcACGGguGGCg -3'
miRNA:   3'- gUGC-CGGGG-GAGGGC-CUGcUGCU--CCG- -5'
5471 3' -63.6 NC_001798.1 + 146992 0.68 0.489405
Target:  5'- gAgGGUCCgCCUcuugccucggggaccCCCGGGCGGgcCGGGGCu -3'
miRNA:   3'- gUgCCGGG-GGA---------------GGGCCUGCU--GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 145560 0.73 0.239626
Target:  5'- uCGCGccggcGCCCCCUCCCGG-CGcuucCGGGGUc -3'
miRNA:   3'- -GUGC-----CGGGGGAGGGCCuGCu---GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 145512 0.67 0.568842
Target:  5'- cCGCGcGCCCCCgCCCGGcCGcCGcGcGCc -3'
miRNA:   3'- -GUGC-CGGGGGaGGGCCuGCuGCuC-CG- -5'
5471 3' -63.6 NC_001798.1 + 145470 0.67 0.568842
Target:  5'- cCGCGcGCCCCCgCCCGGcCGcCGcGcGCc -3'
miRNA:   3'- -GUGC-CGGGGGaGGGCCuGCuGCuC-CG- -5'
5471 3' -63.6 NC_001798.1 + 145428 0.67 0.568842
Target:  5'- cCGCGcGCCCCCgCCCGGcCGcCGcGcGCc -3'
miRNA:   3'- -GUGC-CGGGGGaGGGCCuGCuGCuC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.