miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 134388 0.84 0.044255
Target:  5'- uCGC-GCCgCCCUCCUGGACGugGAGGCc -3'
miRNA:   3'- -GUGcCGG-GGGAGGGCCUGCugCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 98612 0.84 0.045398
Target:  5'- gGCGGCCCCCcgcgCCuCGGGCGGCGuGGCc -3'
miRNA:   3'- gUGCCGGGGGa---GG-GCCUGCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 76828 0.78 0.114854
Target:  5'- uGCGG-CCCCUCCCGGACuugUGGGGCu -3'
miRNA:   3'- gUGCCgGGGGAGGGCCUGcu-GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 83842 0.77 0.136232
Target:  5'- -cCGGUCCCCgUCCGGGCGGCGcuGGCg -3'
miRNA:   3'- guGCCGGGGGaGGGCCUGCUGCu-CCG- -5'
5471 3' -63.6 NC_001798.1 + 4734 0.77 0.13957
Target:  5'- gACGGCCUCC--CCGGACGcCGGGGCc -3'
miRNA:   3'- gUGCCGGGGGagGGCCUGCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 45439 0.76 0.157407
Target:  5'- --aGGCCCCC-CCCGGGCcuACGAGGg -3'
miRNA:   3'- gugCCGGGGGaGGGCCUGc-UGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 150179 0.76 0.165103
Target:  5'- cCGCcGCCCCCUCCgCGG-CGugGGGGg -3'
miRNA:   3'- -GUGcCGGGGGAGG-GCCuGCugCUCCg -5'
5471 3' -63.6 NC_001798.1 + 50056 0.76 0.170689
Target:  5'- gAgGGCCUgcucgaCCUCCCGGACGACGAugacgcuccugcggaGGCc -3'
miRNA:   3'- gUgCCGGG------GGAGGGCCUGCUGCU---------------CCG- -5'
5471 3' -63.6 NC_001798.1 + 58559 0.75 0.17728
Target:  5'- -uCGGCgUCCUCCgGGGCGuauCGGGGCg -3'
miRNA:   3'- guGCCGgGGGAGGgCCUGCu--GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 2374 0.75 0.178963
Target:  5'- cCACGGCCCgcggggcgcaguaggCCUCCaGGGCGGCGgccgaGGGCg -3'
miRNA:   3'- -GUGCCGGG---------------GGAGGgCCUGCUGC-----UCCG- -5'
5471 3' -63.6 NC_001798.1 + 74196 0.75 0.178963
Target:  5'- cCAuCGGCCCCCUgggcauggggcucuaCCgGGACGGCGAcacGGCc -3'
miRNA:   3'- -GU-GCCGGGGGA---------------GGgCCUGCUGCU---CCG- -5'
5471 3' -63.6 NC_001798.1 + 36404 0.75 0.181514
Target:  5'- cCGgGGcCCCCCUgCCGGGCGGggcggUGGGGCg -3'
miRNA:   3'- -GUgCC-GGGGGAgGGCCUGCU-----GCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 37117 0.75 0.185836
Target:  5'- -cCGGCUUCUUCCgGuGACGGCGAGGUg -3'
miRNA:   3'- guGCCGGGGGAGGgC-CUGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 31880 0.75 0.190249
Target:  5'- gGCGGCCCgCC-CCCGGAa---GAGGCg -3'
miRNA:   3'- gUGCCGGG-GGaGGGCCUgcugCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 76930 0.75 0.190249
Target:  5'- cCGgGGCCCCCcCCCGGaagucacgGCGGCGcugcGGGCg -3'
miRNA:   3'- -GUgCCGGGGGaGGGCC--------UGCUGC----UCCG- -5'
5471 3' -63.6 NC_001798.1 + 133922 0.75 0.194754
Target:  5'- aCACGGCaaCC-CCCGGGCGuCGuGGCa -3'
miRNA:   3'- -GUGCCGggGGaGGGCCUGCuGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 150070 0.75 0.204044
Target:  5'- -uUGGCCCCCacccCCUGGGgGGCGAGGg -3'
miRNA:   3'- guGCCGGGGGa---GGGCCUgCUGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 7179 0.75 0.204044
Target:  5'- gACgGGCCCCCgcaCCgGGGCGGCGAccaugauccGGCg -3'
miRNA:   3'- gUG-CCGGGGGa--GGgCCUGCUGCU---------CCG- -5'
5471 3' -63.6 NC_001798.1 + 26230 0.74 0.208832
Target:  5'- cCAUGGCgCCCggcgCgCCGGACuucugcgagGACGAGGCg -3'
miRNA:   3'- -GUGCCGgGGGa---G-GGCCUG---------CUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 17224 0.74 0.213716
Target:  5'- gCACGGCCgCCUUUCGGGguCGcGCGGGGCc -3'
miRNA:   3'- -GUGCCGGgGGAGGGCCU--GC-UGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.