Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5471 | 5' | -50.3 | NC_001798.1 | + | 77545 | 0.79 | 0.540544 |
Target: 5'- gGGCCUGCUGCAcgcCGAAgGGAcgGCCGGg -3' miRNA: 3'- gCUGGACGAUGU---GCUUgUCUa-UGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 76969 | 0.78 | 0.624573 |
Target: 5'- gGACCUguggggGCUGCugGGGCAG-UACCGGg -3' miRNA: 3'- gCUGGA------CGAUGugCUUGUCuAUGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 83821 | 0.77 | 0.656406 |
Target: 5'- aCGGCCUGaUGCACGGACGG--GCCGGu -3' miRNA: 3'- -GCUGGACgAUGUGCUUGUCuaUGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 103963 | 0.76 | 0.739652 |
Target: 5'- gCGuGCCUGCUGgGCGAGCAGc--CCAGg -3' miRNA: 3'- -GC-UGGACGAUgUGCUUGUCuauGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 72183 | 0.72 | 0.895899 |
Target: 5'- cCGACaacaucgagcagCUGCUGCGCGAGCuguacguGAUcGCCAGg -3' miRNA: 3'- -GCUG------------GACGAUGUGCUUGu------CUA-UGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 61717 | 0.71 | 0.915161 |
Target: 5'- aCGGCCcagUGCcGCACGGACgaGGAgGCCAGu -3' miRNA: 3'- -GCUGG---ACGaUGUGCUUG--UCUaUGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 49527 | 0.71 | 0.919326 |
Target: 5'- gCGACCUGCgggagaUGCugcgcaccacgaucGCGGACAGGUACUAc -3' miRNA: 3'- -GCUGGACG------AUG--------------UGCUUGUCUAUGGUc -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 124651 | 0.71 | 0.921073 |
Target: 5'- aCGAUCgUGCUGCGCGAGCcGu--CCGGg -3' miRNA: 3'- -GCUGG-ACGAUGUGCUUGuCuauGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 132526 | 0.71 | 0.926729 |
Target: 5'- gGAgCUGCUgaucuACAUGGACGGGU-CCGGg -3' miRNA: 3'- gCUgGACGA-----UGUGCUUGUCUAuGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 5990 | 0.71 | 0.926729 |
Target: 5'- -cACCgGCUGCGCG-GCGGAgACCGGg -3' miRNA: 3'- gcUGGaCGAUGUGCuUGUCUaUGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 124969 | 0.71 | 0.937768 |
Target: 5'- uGACCUGCUcCGCGugguccccgagcagcACGGcgGCCAGa -3' miRNA: 3'- gCUGGACGAuGUGCu--------------UGUCuaUGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 100610 | 0.7 | 0.955296 |
Target: 5'- gCGGCCUGCUGgACuacACGGAgguCCAGc -3' miRNA: 3'- -GCUGGACGAUgUGcu-UGUCUau-GGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 125617 | 0.69 | 0.966249 |
Target: 5'- ---aCUGCUGCACGu-CGGAcGCCAGc -3' miRNA: 3'- gcugGACGAUGUGCuuGUCUaUGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 48948 | 0.69 | 0.969437 |
Target: 5'- aCGAUCUGUUugcggACGCGGACGGGguuucGCCAc -3' miRNA: 3'- -GCUGGACGA-----UGUGCUUGUCUa----UGGUc -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 135402 | 0.69 | 0.972405 |
Target: 5'- -uGCCUGCagauCGAGCAGAcgGCCAGc -3' miRNA: 3'- gcUGGACGauguGCUUGUCUa-UGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 128162 | 0.69 | 0.974624 |
Target: 5'- gCGGCCUGCUGCGCGGcguccGCuccccucugGCCAu -3' miRNA: 3'- -GCUGGACGAUGUGCU-----UGucua-----UGGUc -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 102733 | 0.68 | 0.977706 |
Target: 5'- gCGACUUGacgcGCACGGACGGcgACCu- -3' miRNA: 3'- -GCUGGACga--UGUGCUUGUCuaUGGuc -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 83980 | 0.68 | 0.980055 |
Target: 5'- gGGCCUGCUcggcgGCGCGAcACAGGauccGCCGc -3' miRNA: 3'- gCUGGACGA-----UGUGCU-UGUCUa---UGGUc -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 45813 | 0.68 | 0.980055 |
Target: 5'- uGGCCcgacGCgagGCGCGGucUAGAUGCCAGu -3' miRNA: 3'- gCUGGa---CGa--UGUGCUu-GUCUAUGGUC- -5' |
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5471 | 5' | -50.3 | NC_001798.1 | + | 37845 | 0.68 | 0.984195 |
Target: 5'- uGuuCUGCcGCGCGAGCGGccGUGCCGc -3' miRNA: 3'- gCugGACGaUGUGCUUGUC--UAUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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