miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 5' -50.3 NC_001798.1 + 2832 0.67 0.990485
Target:  5'- gCGACCagGCUcacgGCGCGcACGGcgGCCAc -3'
miRNA:   3'- -GCUGGa-CGA----UGUGCuUGUCuaUGGUc -5'
5471 5' -50.3 NC_001798.1 + 5990 0.71 0.926729
Target:  5'- -cACCgGCUGCGCG-GCGGAgACCGGg -3'
miRNA:   3'- gcUGGaCGAUGUGCuUGUCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 12311 0.66 0.996644
Target:  5'- aGGcCCUGCa--GCGAGCGGccgggcAUACCGGg -3'
miRNA:   3'- gCU-GGACGaugUGCUUGUC------UAUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 13022 0.66 0.995861
Target:  5'- aGGCCUucgaggugaggcacGCUGC-CGGGgGGAUGCgCAGg -3'
miRNA:   3'- gCUGGA--------------CGAUGuGCUUgUCUAUG-GUC- -5'
5471 5' -50.3 NC_001798.1 + 20463 0.66 0.996054
Target:  5'- gGGCCUG----GCGAGCAGAgcGCCGGu -3'
miRNA:   3'- gCUGGACgaugUGCUUGUCUa-UGGUC- -5'
5471 5' -50.3 NC_001798.1 + 21045 0.66 0.99716
Target:  5'- cCGGCCUGCgagaaaGCGCGGAUguuGggAUCGGg -3'
miRNA:   3'- -GCUGGACGa-----UGUGCUUGu--CuaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 33217 0.66 0.996054
Target:  5'- aGGCCUGUUGgucuuuauCAUaGAACAGA-GCCGGg -3'
miRNA:   3'- gCUGGACGAU--------GUG-CUUGUCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 37845 0.68 0.984195
Target:  5'- uGuuCUGCcGCGCGAGCGGccGUGCCGc -3'
miRNA:   3'- gCugGACGaUGUGCUUGUC--UAUGGUc -5'
5471 5' -50.3 NC_001798.1 + 45813 0.68 0.980055
Target:  5'- uGGCCcgacGCgagGCGCGGucUAGAUGCCAGu -3'
miRNA:   3'- gCUGGa---CGa--UGUGCUu-GUCUAUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 48948 0.69 0.969437
Target:  5'- aCGAUCUGUUugcggACGCGGACGGGguuucGCCAc -3'
miRNA:   3'- -GCUGGACGA-----UGUGCUUGUCUa----UGGUc -5'
5471 5' -50.3 NC_001798.1 + 49527 0.71 0.919326
Target:  5'- gCGACCUGCgggagaUGCugcgcaccacgaucGCGGACAGGUACUAc -3'
miRNA:   3'- -GCUGGACG------AUG--------------UGCUUGUCUAUGGUc -5'
5471 5' -50.3 NC_001798.1 + 49686 0.66 0.995381
Target:  5'- aCGGCCucUGCUGCGaccuggaGAGCuGGcGCCAGu -3'
miRNA:   3'- -GCUGG--ACGAUGUg------CUUGuCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 50058 0.66 0.994617
Target:  5'- gGGCCUGCUcgaccucccggACgACGAugacgcuccuGCGGAgGCCGGg -3'
miRNA:   3'- gCUGGACGA-----------UG-UGCU----------UGUCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 61717 0.71 0.915161
Target:  5'- aCGGCCcagUGCcGCACGGACgaGGAgGCCAGu -3'
miRNA:   3'- -GCUGG---ACGaUGUGCUUG--UCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 62128 0.68 0.984195
Target:  5'- gCGACCUGCUGCAguacuucaaGAugAGuUACCc- -3'
miRNA:   3'- -GCUGGACGAUGUg--------CUugUCuAUGGuc -5'
5471 5' -50.3 NC_001798.1 + 65477 0.66 0.99716
Target:  5'- gCGACaUGCUggugucccGguCGAACAGggACCAGg -3'
miRNA:   3'- -GCUGgACGA--------UguGCUUGUCuaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 69900 0.68 0.986002
Target:  5'- gGGCCcGaaccCACGAACGGAaUGCCGGg -3'
miRNA:   3'- gCUGGaCgau-GUGCUUGUCU-AUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 72183 0.72 0.895899
Target:  5'- cCGACaacaucgagcagCUGCUGCGCGAGCuguacguGAUcGCCAGg -3'
miRNA:   3'- -GCUG------------GACGAUGUGCUUGu------CUA-UGGUC- -5'
5471 5' -50.3 NC_001798.1 + 74850 0.66 0.994535
Target:  5'- aGACCUGCgggucCugGAgguggggGCAG-UGCCGGu -3'
miRNA:   3'- gCUGGACGau---GugCU-------UGUCuAUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 76331 0.66 0.99716
Target:  5'- gGACCUGCUccaGCGGGgccagccccUAGAUGCCc- -3'
miRNA:   3'- gCUGGACGAug-UGCUU---------GUCUAUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.