miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 5' -65 NC_001798.1 + 35540 0.66 0.523407
Target:  5'- gCCGGCgcGGGGCGUugccGGCCCggcccggccccggagCCCGCGg -3'
miRNA:   3'- gGGCCG--CCCCGUAc---CUGGG---------------GGGUGCg -5'
5472 5' -65 NC_001798.1 + 78824 0.66 0.51976
Target:  5'- cCCgCGGCGacGGCcccGGCCCCUgGCGCg -3'
miRNA:   3'- -GG-GCCGCc-CCGuacCUGGGGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 74483 0.66 0.51976
Target:  5'- gUCGaGCGGcGCGUGGccaucacccACCCCCUGCGg -3'
miRNA:   3'- gGGC-CGCCcCGUACC---------UGGGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 25708 0.66 0.51976
Target:  5'- gCCUGG-GcGGGCAacUGGaccggcGCCCCCgACGUc -3'
miRNA:   3'- -GGGCCgC-CCCGU--ACC------UGGGGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 13253 0.66 0.51976
Target:  5'- uUCGGaUGGGGCA--GACCCCCaACGa -3'
miRNA:   3'- gGGCC-GCCCCGUacCUGGGGGgUGCg -5'
5472 5' -65 NC_001798.1 + 97847 0.66 0.517031
Target:  5'- gCgGGCGcGGGCAcGGucaucgacaaccgcGCCgCCCCGgGCg -3'
miRNA:   3'- gGgCCGC-CCCGUaCC--------------UGG-GGGGUgCG- -5'
5472 5' -65 NC_001798.1 + 489 0.67 0.513401
Target:  5'- cCCCGcGCcccgccccgGGGGCuucccccgccccuCCCCCCGCGCc -3'
miRNA:   3'- -GGGC-CG---------CCCCGuaccu--------GGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 91345 0.67 0.510686
Target:  5'- gCCGGCuuccccccgGGGGaagccGGGCCgCCCGCGg -3'
miRNA:   3'- gGGCCG---------CCCCgua--CCUGGgGGGUGCg -5'
5472 5' -65 NC_001798.1 + 92043 0.67 0.510686
Target:  5'- gCUCGGCGaacGGGCG-GGuguagaccccACCCCCaGCGCc -3'
miRNA:   3'- -GGGCCGC---CCCGUaCC----------UGGGGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 147233 0.67 0.510686
Target:  5'- --aGcGCGGGGgccCcgGGGCCCCgggCCGCGCc -3'
miRNA:   3'- gggC-CGCCCC---GuaCCUGGGG---GGUGCG- -5'
5472 5' -65 NC_001798.1 + 38035 0.67 0.510686
Target:  5'- gCCCGuGCaccGCAgccGCCCCCCACGCu -3'
miRNA:   3'- -GGGC-CGcccCGUaccUGGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 46005 0.67 0.510686
Target:  5'- aUCCaGGgGaGGGCGUGGGuCCCCgCGacgaGCa -3'
miRNA:   3'- -GGG-CCgC-CCCGUACCU-GGGGgGUg---CG- -5'
5472 5' -65 NC_001798.1 + 107069 0.67 0.510686
Target:  5'- aUCGGgGGGGaggcuGUGGGCCCgcaagCCC-CGCc -3'
miRNA:   3'- gGGCCgCCCCg----UACCUGGG-----GGGuGCG- -5'
5472 5' -65 NC_001798.1 + 154306 0.67 0.510686
Target:  5'- gCCCucuuaaggGGCGGcGGCAggacggGGACuCCCgCCcCGCc -3'
miRNA:   3'- -GGG--------CCGCC-CCGUa-----CCUG-GGG-GGuGCG- -5'
5472 5' -65 NC_001798.1 + 109948 0.67 0.509782
Target:  5'- uCCCGGCGGacgucauGGCAcaacaGACCCgCgGCGUg -3'
miRNA:   3'- -GGGCCGCC-------CCGUac---CUGGGgGgUGCG- -5'
5472 5' -65 NC_001798.1 + 11393 0.67 0.501678
Target:  5'- uCCgaGGCGGGcCAUGGccGCCUCguugaCCGCGCa -3'
miRNA:   3'- -GGg-CCGCCCcGUACC--UGGGG-----GGUGCG- -5'
5472 5' -65 NC_001798.1 + 96715 0.67 0.501678
Target:  5'- -gCGGUGGGGUcgGGccucaucguGCCCCCgGaGCu -3'
miRNA:   3'- ggGCCGCCCCGuaCC---------UGGGGGgUgCG- -5'
5472 5' -65 NC_001798.1 + 94976 0.67 0.501678
Target:  5'- cCCCagcgugcaGGCGGcGGCcgccUGGGCCCCgCagggcgGCGCg -3'
miRNA:   3'- -GGG--------CCGCC-CCGu---ACCUGGGGgG------UGCG- -5'
5472 5' -65 NC_001798.1 + 104105 0.67 0.501678
Target:  5'- gCCUGGCGGGcGCccGacGACauauCCaCCACGCg -3'
miRNA:   3'- -GGGCCGCCC-CGuaC--CUGg---GG-GGUGCG- -5'
5472 5' -65 NC_001798.1 + 154122 0.67 0.501678
Target:  5'- cCCCGGCGGcGG---GGACCCCggCgGCGg -3'
miRNA:   3'- -GGGCCGCC-CCguaCCUGGGG--GgUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.