miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 5' -65 NC_001798.1 + 80547 0.82 0.049501
Target:  5'- gCCCGGCGGGGgGgcgcgaGGcgucccuccccgagGCCCCCCACGCc -3'
miRNA:   3'- -GGGCCGCCCCgUa-----CC--------------UGGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 16237 0.82 0.056561
Target:  5'- -gCGGUGGGGCcgGGGCCCUCCcCGCc -3'
miRNA:   3'- ggGCCGCCCCGuaCCUGGGGGGuGCG- -5'
5472 5' -65 NC_001798.1 + 147203 0.81 0.06098
Target:  5'- gCCCGGCGGuccGGCccGGGCCCCCgGCGg -3'
miRNA:   3'- -GGGCCGCC---CCGuaCCUGGGGGgUGCg -5'
5472 5' -65 NC_001798.1 + 98599 0.81 0.06411
Target:  5'- cCCCGGCGGccCcgGcGGCCCCCCGCGCc -3'
miRNA:   3'- -GGGCCGCCccGuaC-CUGGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 2532 0.8 0.074457
Target:  5'- gUCGGCGGGGCGggGGGCgcggCCCCCGCGg -3'
miRNA:   3'- gGGCCGCCCCGUa-CCUG----GGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 147907 0.8 0.077669
Target:  5'- uCCCGGgGGGGCAggcgcgggucGGGCccguacgcccaccgCCCCCACGCg -3'
miRNA:   3'- -GGGCCgCCCCGUa---------CCUG--------------GGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 129362 0.79 0.086395
Target:  5'- gCCUGGCGGGGCccccGGACCCgCCAagGCa -3'
miRNA:   3'- -GGGCCGCCCCGua--CCUGGGgGGUg-CG- -5'
5472 5' -65 NC_001798.1 + 129705 0.79 0.090765
Target:  5'- aCCGGCGc-GCAUcGGACCCCCCAuCGCg -3'
miRNA:   3'- gGGCCGCccCGUA-CCUGGGGGGU-GCG- -5'
5472 5' -65 NC_001798.1 + 74105 0.78 0.097476
Target:  5'- cCCaCGGCGGGGCugcUGGAgacgcaaUgCCCCGCGCa -3'
miRNA:   3'- -GG-GCCGCCCCGu--ACCU-------GgGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 29406 0.78 0.100142
Target:  5'- gCCGGCGGGGCGccggggGGACUCCCaucuGCGUc -3'
miRNA:   3'- gGGCCGCCCCGUa-----CCUGGGGGg---UGCG- -5'
5472 5' -65 NC_001798.1 + 111599 0.78 0.101874
Target:  5'- gCCCGGCGGGGCGgccuccUGGAgCCCCgggggcggcagacuCGCGUc -3'
miRNA:   3'- -GGGCCGCCCCGU------ACCUgGGGG--------------GUGCG- -5'
5472 5' -65 NC_001798.1 + 154507 0.77 0.10989
Target:  5'- cCCCGcgcgccGCGGGGCugccuucccgcGGGCgCCCCCGCGCg -3'
miRNA:   3'- -GGGC------CGCCCCGua---------CCUG-GGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 169 0.77 0.10989
Target:  5'- cCCCGcgcgccGCGGGGCugccuucccgcGGGCgCCCCCGCGCg -3'
miRNA:   3'- -GGGC------CGCCCCGua---------CCUG-GGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 34796 0.77 0.115652
Target:  5'- gCCGGCgcggcccGGGGCcccGGGgCCCCCGCGCu -3'
miRNA:   3'- gGGCCG-------CCCCGua-CCUgGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 128411 0.77 0.118782
Target:  5'- uUCGGCGGGGCcUGacGACCgCCuCCACGCu -3'
miRNA:   3'- gGGCCGCCCCGuAC--CUGG-GG-GGUGCG- -5'
5472 5' -65 NC_001798.1 + 43021 0.77 0.121695
Target:  5'- gCCCGGgGGGaGCGcgGGGCCCCggGCGCa -3'
miRNA:   3'- -GGGCCgCCC-CGUa-CCUGGGGggUGCG- -5'
5472 5' -65 NC_001798.1 + 3565 0.77 0.124675
Target:  5'- cCCCaGGUGGGGCAcGG-CCCgCgCCACGCu -3'
miRNA:   3'- -GGG-CCGCCCCGUaCCuGGG-G-GGUGCG- -5'
5472 5' -65 NC_001798.1 + 5918 0.76 0.127722
Target:  5'- gCCCGGaCGGGGgGcGGGCCguuCCUCGCGCa -3'
miRNA:   3'- -GGGCC-GCCCCgUaCCUGG---GGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 122107 0.76 0.136297
Target:  5'- gCCCGGCGGGGggcgcuuugccagcCGgggGGGCCCCCgGgcCGCg -3'
miRNA:   3'- -GGGCCGCCCC--------------GUa--CCUGGGGGgU--GCG- -5'
5472 5' -65 NC_001798.1 + 86903 0.76 0.137282
Target:  5'- cCCCGGCGuGGaGCGccGGGCCUCCCGCa- -3'
miRNA:   3'- -GGGCCGC-CC-CGUa-CCUGGGGGGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.