miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 5' -65 NC_001798.1 + 83 0.73 0.219364
Target:  5'- gCgGGCGGgcGGCA-GGGCagCCCCGCGCg -3'
miRNA:   3'- gGgCCGCC--CCGUaCCUGg-GGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 169 0.77 0.10989
Target:  5'- cCCCGcgcgccGCGGGGCugccuucccgcGGGCgCCCCCGCGCg -3'
miRNA:   3'- -GGGC------CGCCCCGua---------CCUG-GGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 489 0.67 0.513401
Target:  5'- cCCCGcGCcccgccccgGGGGCuucccccgccccuCCCCCCGCGCc -3'
miRNA:   3'- -GGGC-CG---------CCCCGuaccu--------GGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 1556 0.67 0.475092
Target:  5'- aCUCGcGCGGGGaCAUGGGCaCCa--GCGUg -3'
miRNA:   3'- -GGGC-CGCCCC-GUACCUG-GGgggUGCG- -5'
5472 5' -65 NC_001798.1 + 2094 0.72 0.245589
Target:  5'- uCCgGGgGGGGCcc--GCCCCCgGCGCg -3'
miRNA:   3'- -GGgCCgCCCCGuaccUGGGGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 2421 0.7 0.325908
Target:  5'- gCCGGCGuGuGGC-UGGGCCCCggcggCugGCg -3'
miRNA:   3'- gGGCCGC-C-CCGuACCUGGGGg----GugCG- -5'
5472 5' -65 NC_001798.1 + 2462 0.68 0.449228
Target:  5'- gCCCuGC-GGGUcgGGGCCCUCgGCGg -3'
miRNA:   3'- -GGGcCGcCCCGuaCCUGGGGGgUGCg -5'
5472 5' -65 NC_001798.1 + 2532 0.8 0.074457
Target:  5'- gUCGGCGGGGCGggGGGCgcggCCCCCGCGg -3'
miRNA:   3'- gGGCCGCCCCGUa-CCUG----GGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 2571 0.71 0.292889
Target:  5'- gCC-GCGGGGCggGGGgCgUCCGCGCg -3'
miRNA:   3'- gGGcCGCCCCGuaCCUgGgGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 2635 0.74 0.188442
Target:  5'- cCCUGGcCGGGGCggGGcucuugcgcuugcgcGCCUCCCGCGg -3'
miRNA:   3'- -GGGCC-GCCCCGuaCC---------------UGGGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 2980 0.75 0.166061
Target:  5'- -gCGGCGGGGCGgccggcccgcGGGCCCCggGCGCg -3'
miRNA:   3'- ggGCCGCCCCGUa---------CCUGGGGggUGCG- -5'
5472 5' -65 NC_001798.1 + 3323 0.72 0.240143
Target:  5'- -gCGGCGGcGGCGgcGGGCUUCCCGCGg -3'
miRNA:   3'- ggGCCGCC-CCGUa-CCUGGGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 3565 0.77 0.124675
Target:  5'- cCCCaGGUGGGGCAcGG-CCCgCgCCACGCu -3'
miRNA:   3'- -GGG-CCGCCCCGUaCCuGGG-G-GGUGCG- -5'
5472 5' -65 NC_001798.1 + 3889 0.68 0.44078
Target:  5'- cCCCgggGGCGGGGgGccGGCCCCgggCCACGg -3'
miRNA:   3'- -GGG---CCGCCCCgUacCUGGGG---GGUGCg -5'
5472 5' -65 NC_001798.1 + 4125 0.71 0.305774
Target:  5'- gCUCGGcCGGGGCGccgcccccgGGGCCCUCgCGgGCa -3'
miRNA:   3'- -GGGCC-GCCCCGUa--------CCUGGGGG-GUgCG- -5'
5472 5' -65 NC_001798.1 + 4437 0.66 0.556641
Target:  5'- gCUGGCcauGGGGuCcgGGuACgCCCCGCGg -3'
miRNA:   3'- gGGCCG---CCCC-GuaCC-UGgGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 5090 0.66 0.539015
Target:  5'- -gUGGgGGGGgGUGGuuggcagucucucucCCCCCCGUGCg -3'
miRNA:   3'- ggGCCgCCCCgUACCu--------------GGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 5449 0.68 0.429107
Target:  5'- gCCCGGCGcGGGCGgcuuccgcuuCCgCCCGCGa -3'
miRNA:   3'- -GGGCCGC-CCCGUaccu------GGgGGGUGCg -5'
5472 5' -65 NC_001798.1 + 5918 0.76 0.127722
Target:  5'- gCCCGGaCGGGGgGcGGGCCguuCCUCGCGCa -3'
miRNA:   3'- -GGGCC-GCCCCgUaCCUGG---GGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 6630 0.71 0.286607
Target:  5'- gCCGG-GGGGacgGGGCCCCgaucccaacauCCGCGCu -3'
miRNA:   3'- gGGCCgCCCCguaCCUGGGG-----------GGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.