miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 3' -62.9 NC_001798.1 + 115537 0.83 0.056884
Target:  5'- cCCCGGCCggCCCCGGCGCggaCAUGcAGCa -3'
miRNA:   3'- -GGGCCGGuaGGGGCCGCG---GUAC-UCGg -5'
5473 3' -62.9 NC_001798.1 + 24692 0.81 0.079135
Target:  5'- gCCCGGCCcgccgcgCCCCcGCGCCcgGGGCCc -3'
miRNA:   3'- -GGGCCGGua-----GGGGcCGCGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 27949 0.81 0.083226
Target:  5'- gCCGGCCGcgCCCCGGCGCUcc-AGCCg -3'
miRNA:   3'- gGGCCGGUa-GGGGCCGCGGuacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 4735 0.8 0.087519
Target:  5'- -aCGGCC-UCCCCGGaCGCCG-GGGCCg -3'
miRNA:   3'- ggGCCGGuAGGGGCC-GCGGUaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 25787 0.79 0.104259
Target:  5'- aCCUGGCCuUCgCCGGCGCCGUGgAGUUc -3'
miRNA:   3'- -GGGCCGGuAGgGGCCGCGGUAC-UCGG- -5'
5473 3' -62.9 NC_001798.1 + 138728 0.78 0.119774
Target:  5'- cCCCgGGCCGgcgcgcuccgcggCCCCGGCGaCCGUG-GCCa -3'
miRNA:   3'- -GGG-CCGGUa------------GGGGCCGC-GGUACuCGG- -5'
5473 3' -62.9 NC_001798.1 + 127960 0.78 0.120961
Target:  5'- gCCCGGCCcgcGUCCCCGGC-CCucucUGAGgCCu -3'
miRNA:   3'- -GGGCCGG---UAGGGGCCGcGGu---ACUC-GG- -5'
5473 3' -62.9 NC_001798.1 + 1519 0.78 0.123977
Target:  5'- gCCCGGCCGUCCa--GCGCCggGAGCa -3'
miRNA:   3'- -GGGCCGGUAGGggcCGCGGuaCUCGg -5'
5473 3' -62.9 NC_001798.1 + 91866 0.78 0.127061
Target:  5'- aCCGGCCG-CCCCGGCcgagcauacccaGCUcUGGGCCg -3'
miRNA:   3'- gGGCCGGUaGGGGCCG------------CGGuACUCGG- -5'
5473 3' -62.9 NC_001798.1 + 80385 0.77 0.147107
Target:  5'- gUCCGGCCcaggCCCUGGCgGCgGUGAGCg -3'
miRNA:   3'- -GGGCCGGua--GGGGCCG-CGgUACUCGg -5'
5473 3' -62.9 NC_001798.1 + 93266 0.77 0.154406
Target:  5'- cCCgCGGCCcgCgCCGGCGCCGUcgGGGCg -3'
miRNA:   3'- -GG-GCCGGuaGgGGCCGCGGUA--CUCGg -5'
5473 3' -62.9 NC_001798.1 + 23620 0.77 0.154406
Target:  5'- cCCCGGCCcggaccCCCgCGGCGaCCGcGGGCCg -3'
miRNA:   3'- -GGGCCGGua----GGG-GCCGC-GGUaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 71206 0.77 0.158177
Target:  5'- gUCCGGCCGUCaCCGGCcugcugcaGCUAgggGAGCCg -3'
miRNA:   3'- -GGGCCGGUAGgGGCCG--------CGGUa--CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 147224 0.77 0.158177
Target:  5'- cCCCGGCgGagcgcgggggCCCCGGgGCCccGGGCCg -3'
miRNA:   3'- -GGGCCGgUa---------GGGGCCgCGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 82080 0.77 0.158177
Target:  5'- gCCGGCCcaCCCCGGCGCCucacGcGCCc -3'
miRNA:   3'- gGGCCGGuaGGGGCCGCGGua--CuCGG- -5'
5473 3' -62.9 NC_001798.1 + 23923 0.77 0.158177
Target:  5'- cCUCGGgCG-CCCCGGCGCCcguGUGGGCg -3'
miRNA:   3'- -GGGCCgGUaGGGGCCGCGG---UACUCGg -5'
5473 3' -62.9 NC_001798.1 + 24860 0.76 0.165971
Target:  5'- gCCgUGGCCG-CCgUGcGCGCCGUGAGCCu -3'
miRNA:   3'- -GG-GCCGGUaGGgGC-CGCGGUACUCGG- -5'
5473 3' -62.9 NC_001798.1 + 3033 0.76 0.177037
Target:  5'- cUCCGGCCAgCCCCGGCacggccgccaggucGCCGUcGaAGCCc -3'
miRNA:   3'- -GGGCCGGUaGGGGCCG--------------CGGUA-C-UCGG- -5'
5473 3' -62.9 NC_001798.1 + 109669 0.76 0.177883
Target:  5'- gCCaCGGCCGUCCuCCgGGCGCCGUuccuggcGGGCg -3'
miRNA:   3'- -GG-GCCGGUAGG-GG-CCGCGGUA-------CUCGg -5'
5473 3' -62.9 NC_001798.1 + 42018 0.76 0.182596
Target:  5'- uCCaCGGUC-UCCCCGGCGUC--GGGCCg -3'
miRNA:   3'- -GG-GCCGGuAGGGGCCGCGGuaCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.