miRNA display CGI


Results 1 - 20 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 3' -62.9 NC_001798.1 + 137 0.7 0.381399
Target:  5'- gCCGGCCGcUCCCCcgcgGGCGCC----GCCc -3'
miRNA:   3'- gGGCCGGU-AGGGG----CCGCGGuacuCGG- -5'
5473 3' -62.9 NC_001798.1 + 408 0.66 0.63037
Target:  5'- uCCCGccgagcucgcggcaGCCccucccCCCCGcGCGCCAcgGGGCUg -3'
miRNA:   3'- -GGGC--------------CGGua----GGGGC-CGCGGUa-CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 475 0.69 0.430162
Target:  5'- cCCgCGGCCGccUCCCCcGCGCCccgccccggGGGCUu -3'
miRNA:   3'- -GG-GCCGGU--AGGGGcCGCGGua-------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 1132 0.68 0.518867
Target:  5'- aCgGGCUcgcgCCUCGGCGgCGUG-GCCa -3'
miRNA:   3'- gGgCCGGua--GGGGCCGCgGUACuCGG- -5'
5473 3' -62.9 NC_001798.1 + 1198 0.69 0.447212
Target:  5'- gCCgCGGCCAgcaccgUCCCCGcGCGgCCcgcGGCCg -3'
miRNA:   3'- -GG-GCCGGU------AGGGGC-CGC-GGuacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 1473 0.69 0.430162
Target:  5'- gUCCGGCg--CgCCgGGCGCCAUGGcGUCg -3'
miRNA:   3'- -GGGCCGguaG-GGgCCGCGGUACU-CGG- -5'
5473 3' -62.9 NC_001798.1 + 1519 0.78 0.123977
Target:  5'- gCCCGGCCGUCCa--GCGCCggGAGCa -3'
miRNA:   3'- -GGGCCGGUAGGggcCGCGGuaCUCGg -5'
5473 3' -62.9 NC_001798.1 + 1893 0.75 0.21029
Target:  5'- gCCGGCCAgcagCCCCaggaacuccacGGCGCCGgcgaaGGCCa -3'
miRNA:   3'- gGGCCGGUa---GGGG-----------CCGCGGUac---UCGG- -5'
5473 3' -62.9 NC_001798.1 + 2190 0.68 0.528158
Target:  5'- aCCUGGCgCAUCCaggccgccgcgCGGCGCagcGGGCCc -3'
miRNA:   3'- -GGGCCG-GUAGGg----------GCCGCGguaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 2368 0.68 0.528158
Target:  5'- gCUCGGCCAcggCCCgCGGgGCgCAguaGGCCu -3'
miRNA:   3'- -GGGCCGGUa--GGG-GCCgCG-GUac-UCGG- -5'
5473 3' -62.9 NC_001798.1 + 2814 0.7 0.389267
Target:  5'- gCCgGGCCcagggCCCCGGCGaCCA--GGCUc -3'
miRNA:   3'- -GGgCCGGua---GGGGCCGC-GGUacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 2991 0.7 0.405319
Target:  5'- gCCGGCCcgcgggCCCCgGGCGCgGgggcgcggcGGGCCg -3'
miRNA:   3'- gGGCCGGua----GGGG-CCGCGgUa--------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 3033 0.76 0.177037
Target:  5'- cUCCGGCCAgCCCCGGCacggccgccaggucGCCGUcGaAGCCc -3'
miRNA:   3'- -GGGCCGGUaGGGGCCG--------------CGGUA-C-UCGG- -5'
5473 3' -62.9 NC_001798.1 + 3128 0.7 0.389267
Target:  5'- aCgCGGCCcgCCuCCGcGCGCCGgccGCCg -3'
miRNA:   3'- -GgGCCGGuaGG-GGC-CGCGGUacuCGG- -5'
5473 3' -62.9 NC_001798.1 + 3242 0.69 0.438639
Target:  5'- -gCGGCgAgcaccCCCgCGGCGCCGU-AGCCg -3'
miRNA:   3'- ggGCCGgUa----GGG-GCCGCGGUAcUCGG- -5'
5473 3' -62.9 NC_001798.1 + 3402 0.7 0.397241
Target:  5'- cCCCGGUCAgcgccgcgUUCUCGcGCGCCAgcagGGGCg -3'
miRNA:   3'- -GGGCCGGU--------AGGGGC-CGCGGUa---CUCGg -5'
5473 3' -62.9 NC_001798.1 + 3647 0.74 0.218264
Target:  5'- gCCUGGUCcagcgccacGUCCCCgGGCGCCAcgcgcggguucugGAGCCa -3'
miRNA:   3'- -GGGCCGG---------UAGGGG-CCGCGGUa------------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 3870 0.66 0.652615
Target:  5'- gCCC-GCCGUacagcacgcgCCCCGGgGgCGggGGGCCg -3'
miRNA:   3'- -GGGcCGGUA----------GGGGCCgCgGUa-CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 4004 0.71 0.350266
Target:  5'- gCCCGGCCGUgaagcggCCCgUGGCGUCGc-GGCCg -3'
miRNA:   3'- -GGGCCGGUA-------GGG-GCCGCGGUacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 4125 0.68 0.509642
Target:  5'- gCUCGGCCGgggcgccgcCCCCGGgGCCcucgcGGGCa -3'
miRNA:   3'- -GGGCCGGUa--------GGGGCCgCGGua---CUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.