miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 5' -51.1 NC_001798.1 + 97648 0.85 0.249992
Target:  5'- cGGACGUGCGgGAGcGCCGgcGGCUGUa -3'
miRNA:   3'- aCUUGCACGUgCUC-CGGCauUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 41608 0.8 0.483909
Target:  5'- --cGCGaGCACGAGGCCGUAGGCcGUu -3'
miRNA:   3'- acuUGCaCGUGCUCCGGCAUUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 70541 0.79 0.534009
Target:  5'- cGAcccACGcGCugGAGGCCGccGGGCUGCg -3'
miRNA:   3'- aCU---UGCaCGugCUCCGGCa-UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 23047 0.77 0.606851
Target:  5'- cGAugGUGgACGAGGCCGUucGCa-- -3'
miRNA:   3'- aCUugCACgUGCUCCGGCAuuUGacg -5'
5473 5' -51.1 NC_001798.1 + 11747 0.77 0.627957
Target:  5'- cGAGgGUcccagGCGCGGGGCCGaaaagggAAGCUGCg -3'
miRNA:   3'- aCUUgCA-----CGUGCUCCGGCa------UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 26342 0.76 0.670137
Target:  5'- cGAcgcCGUGCGCGGcGGCCcGgcgGAGCUGCg -3'
miRNA:   3'- aCUu--GCACGUGCU-CCGG-Ca--UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 24828 0.76 0.680623
Target:  5'- gGGACcUGCGCGuGGCCGgcGGCaGCg -3'
miRNA:   3'- aCUUGcACGUGCuCCGGCauUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 52411 0.75 0.722044
Target:  5'- cUGAAcgcCGUGCugGGcgcGGCCGUGuacgcGCUGCa -3'
miRNA:   3'- -ACUU---GCACGugCU---CCGGCAUu----UGACG- -5'
5473 5' -51.1 NC_001798.1 + 27131 0.75 0.732219
Target:  5'- gGAGCGggagggaagGCACGGGGCgCGggagggagGGGCUGCu -3'
miRNA:   3'- aCUUGCa--------CGUGCUCCG-GCa-------UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 144661 0.75 0.742301
Target:  5'- -cGugGUGUugGcAGGCCGUAAAUcGCg -3'
miRNA:   3'- acUugCACGugC-UCCGGCAUUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 139669 0.74 0.752281
Target:  5'- cGuGCGUGCagacccucaACGAGGUCcUGGACUGCg -3'
miRNA:   3'- aCuUGCACG---------UGCUCCGGcAUUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 79130 0.74 0.762148
Target:  5'- cGAGCGcGCG-GAGGCCGUggagGAGCUGg -3'
miRNA:   3'- aCUUGCaCGUgCUCCGGCA----UUUGACg -5'
5473 5' -51.1 NC_001798.1 + 18567 0.74 0.790973
Target:  5'- cGAACGUGCgaACG-GGCCGUGuGAUaGCa -3'
miRNA:   3'- aCUUGCACG--UGCuCCGGCAU-UUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 140762 0.73 0.818427
Target:  5'- aGGACGcgggGCACGuGcGCUGUGAGgUGCa -3'
miRNA:   3'- aCUUGCa---CGUGCuC-CGGCAUUUgACG- -5'
5473 5' -51.1 NC_001798.1 + 52730 0.73 0.835844
Target:  5'- cGGACGUGCGCGccGCCGcgGAACa-- -3'
miRNA:   3'- aCUUGCACGUGCucCGGCa-UUUGacg -5'
5473 5' -51.1 NC_001798.1 + 83568 0.72 0.86825
Target:  5'- -aAugGUGCugG-GGCgGUGaAACUGCg -3'
miRNA:   3'- acUugCACGugCuCCGgCAU-UUGACG- -5'
5473 5' -51.1 NC_001798.1 + 42763 0.72 0.875803
Target:  5'- cGGGCGgcGCGCGGGGCCGacAGGC-GCu -3'
miRNA:   3'- aCUUGCa-CGUGCUCCGGCa-UUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 130782 0.72 0.880952
Target:  5'- cGAugGUGCGuCGgcgccgggucaaucAGGCCGUGAACcugacGCa -3'
miRNA:   3'- aCUugCACGU-GC--------------UCCGGCAUUUGa----CG- -5'
5473 5' -51.1 NC_001798.1 + 134637 0.71 0.890208
Target:  5'- cGAG-GUGUGCGAGGUCGgc--CUGCg -3'
miRNA:   3'- aCUUgCACGUGCUCCGGCauuuGACG- -5'
5473 5' -51.1 NC_001798.1 + 120502 0.71 0.897051
Target:  5'- cGGAgGcGCGCGuguuGGCCGUGAAC-GCc -3'
miRNA:   3'- aCUUgCaCGUGCu---CCGGCAUUUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.