miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 5' -51.1 NC_001798.1 + 1578 0.69 0.959592
Target:  5'- -cAGCGUGU-CGGGGCCG-AAGCgcgUGCg -3'
miRNA:   3'- acUUGCACGuGCUCCGGCaUUUG---ACG- -5'
5473 5' -51.1 NC_001798.1 + 2330 0.68 0.972372
Target:  5'- cGGGCGccacgGCGCGGGGaagagcgggugguCCGUGAGCUcgGCc -3'
miRNA:   3'- aCUUGCa----CGUGCUCC-------------GGCAUUUGA--CG- -5'
5473 5' -51.1 NC_001798.1 + 6615 0.66 0.993779
Target:  5'- gGGACGgggGgACG-GGCCGgggGGACgggGCc -3'
miRNA:   3'- aCUUGCa--CgUGCuCCGGCa--UUUGa--CG- -5'
5473 5' -51.1 NC_001798.1 + 11747 0.77 0.627957
Target:  5'- cGAGgGUcccagGCGCGGGGCCGaaaagggAAGCUGCg -3'
miRNA:   3'- aCUUgCA-----CGUGCUCCGGCa------UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 11973 0.69 0.963197
Target:  5'- aGGGCGgauagGCGGGGCUGUGGGCguggUGCg -3'
miRNA:   3'- aCUUGCacg--UGCUCCGGCAUUUG----ACG- -5'
5473 5' -51.1 NC_001798.1 + 15218 0.66 0.993779
Target:  5'- gGAGCGUcCGCGGGuCCGUGuGGgUGCg -3'
miRNA:   3'- aCUUGCAcGUGCUCcGGCAU-UUgACG- -5'
5473 5' -51.1 NC_001798.1 + 15475 0.66 0.989204
Target:  5'- -aGACGUGgGCGgggGGGUCGUGggGGCUGg -3'
miRNA:   3'- acUUGCACgUGC---UCCGGCAU--UUGACg -5'
5473 5' -51.1 NC_001798.1 + 16841 0.69 0.963197
Target:  5'- cGAugGCGUGCAUGAcGCCGg--GCgGCa -3'
miRNA:   3'- aCU--UGCACGUGCUcCGGCauuUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 18567 0.74 0.790973
Target:  5'- cGAACGUGCgaACG-GGCCGUGuGAUaGCa -3'
miRNA:   3'- aCUUGCACG--UGCuCCGGCAU-UUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 20485 0.71 0.909372
Target:  5'- gUGcGCGUGCGCGAuccccggaagacuGGCCGgggccugGggUUGCg -3'
miRNA:   3'- -ACuUGCACGUGCU-------------CCGGCa------UuuGACG- -5'
5473 5' -51.1 NC_001798.1 + 22348 0.67 0.984312
Target:  5'- cGGGCGUcgGgGCGGGGCCGcgcauaaUGCg -3'
miRNA:   3'- aCUUGCA--CgUGCUCCGGCauuug--ACG- -5'
5473 5' -51.1 NC_001798.1 + 23047 0.77 0.606851
Target:  5'- cGAugGUGgACGAGGCCGUucGCa-- -3'
miRNA:   3'- aCUugCACgUGCUCCGGCAuuUGacg -5'
5473 5' -51.1 NC_001798.1 + 24583 0.7 0.927524
Target:  5'- gGAgGCGgGcCGCGuGGCCGUGGAgUGCc -3'
miRNA:   3'- aCU-UGCaC-GUGCuCCGGCAUUUgACG- -5'
5473 5' -51.1 NC_001798.1 + 24669 0.67 0.9861
Target:  5'- cGGcCGUGC-CGGGGCUGgccgGAGCccgGCc -3'
miRNA:   3'- aCUuGCACGuGCUCCGGCa---UUUGa--CG- -5'
5473 5' -51.1 NC_001798.1 + 24828 0.76 0.680623
Target:  5'- gGGACcUGCGCGuGGCCGgcGGCaGCg -3'
miRNA:   3'- aCUUGcACGUGCuCCGGCauUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 25547 0.69 0.963197
Target:  5'- aGGACGUGCGCGuGGUgauccucuacuCGcc-GCUGCc -3'
miRNA:   3'- aCUUGCACGUGCuCCG-----------GCauuUGACG- -5'
5473 5' -51.1 NC_001798.1 + 26342 0.76 0.670137
Target:  5'- cGAcgcCGUGCGCGGcGGCCcGgcgGAGCUGCg -3'
miRNA:   3'- aCUu--GCACGUGCU-CCGG-Ca--UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 27131 0.75 0.732219
Target:  5'- gGAGCGggagggaagGCACGGGGCgCGggagggagGGGCUGCu -3'
miRNA:   3'- aCUUGCa--------CGUGCUCCG-GCa-------UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 27221 0.67 0.987728
Target:  5'- gGGGCGggGCGCGGGGgaGgcGGCcGCg -3'
miRNA:   3'- aCUUGCa-CGUGCUCCggCauUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 27608 0.66 0.993779
Target:  5'- aGGGgGcGCGCGGGGCUGcc--CUGCc -3'
miRNA:   3'- aCUUgCaCGUGCUCCGGCauuuGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.